File tree
58 files changed
+84
-203
lines changed- modules/nf-core
- bbmap/bbsplit
- bedtools/genomecov
- cat/fastq
- custom
- catadditionalfasta
- templates
- getchromsizes
- tx2gene
- templates
- dupradar
- fastp
- fastqc
- fq/subsample
- gffread
- gunzip
- hisat2
- align
- build
- tests
- extractsplicesites
- kallisto
- index
- quant
- multiqc
- picard/markduplicates
- preseq/lcextrap
- qualimap/rnaseq
- rsem
- calculateexpression
- preparereference
- rseqc
- bamstat
- inferexperiment
- innerdistance
- junctionannotation
- junctionsaturation
- readdistribution
- readduplication
- tin
- salmon
- index
- quant
- samtools
- flagstat
- idxstats
- index
- sort
- stats
- sortmerna
- star
- align
- genomegenerate
- stringtie/stringtie
- subread/featurecounts
- trimgalore
- ucsc
- bedclip
- bedgraphtobigwig
- umitools
- dedup
- extract
- prepareforrsem
- untar
Some content is hidden
Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.
58 files changed
+84
-203
lines changedLarge diffs are not rendered by default.
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.
Lines changed: 12 additions & 4 deletions
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.
0 commit comments