Fix linting

Author: drpatelh

.prettierignore

@@ -6,4 +6,4 @@ results/
 .DS_Store
 testing/
 testing*
-*.pyc
+*.pyc

nextflow_schema.json

@@ -10,9 +10,7 @@
             "type": "object",
             "fa_icon": "fas fa-terminal",
             "description": "Define where the pipeline should find input data and save output data.",
-            "required": [
-                "outdir"
-            ],
+            "required": ["outdir"],
             "properties": {
                 "input": {
                     "type": "string",
@@ -368,19 +366,13 @@
                     "default": "star_salmon",
                     "description": "Specifies the alignment algorithm to use - available options are 'star_salmon', 'star_rsem' and 'hisat2'.",
                     "fa_icon": "fas fa-map-signs",
-                    "enum": [
-                        "star_salmon",
-                        "star_rsem",
-                        "hisat2"
-                    ]
+                    "enum": ["star_salmon", "star_rsem", "hisat2"]
                 },
                 "pseudo_aligner": {
                     "type": "string",
                     "description": "Specifies the pseudo aligner to use - available options are 'salmon'. Runs in addition to '--aligner'.",
                     "fa_icon": "fas fa-hamburger",
-                    "enum": [
-                        "salmon"
-                    ]
+                    "enum": ["salmon"]
                 },
                 "bam_csi_index": {
                     "type": "boolean",
@@ -616,14 +608,7 @@
                     "description": "Method used to save pipeline results to output directory.",
                     "help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
                     "fa_icon": "fas fa-copy",
-                    "enum": [
-                        "symlink",
-                        "rellink",
-                        "link",
-                        "copy",
-                        "copyNoFollow",
-                        "move"
-                    ],
+                    "enum": ["symlink", "rellink", "link", "copy", "copyNoFollow", "move"],
                     "hidden": true
                 },
                 "email_on_fail": {