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‎tests/default.nf.test.snap‎

Lines changed: 21 additions & 16 deletions
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@@ -863,24 +863,24 @@
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"star_salmon/featurecounts",
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"star_salmon/featurecounts/RAP1_IAA_30M_REP1.biotype_counts_mqc.tsv",
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"star_salmon/featurecounts/RAP1_IAA_30M_REP1.featureCounts.txt",
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"star_salmon/featurecounts/RAP1_IAA_30M_REP1.featureCounts.txt.summary",
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"star_salmon/featurecounts/RAP1_IAA_30M_REP1.featureCounts.tsv",
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"star_salmon/featurecounts/RAP1_IAA_30M_REP1.featureCounts.tsv.summary",
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"star_salmon/featurecounts/RAP1_UNINDUCED_REP1.featureCounts.txt.summary",
870+
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871+
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875+
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"star_salmon/featurecounts/WT_REP1.featureCounts.txt.summary",
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"star_salmon/featurecounts/WT_REP2.featureCounts.txt.summary",
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"star_salmon/featurecounts/WT_REP2.featureCounts.tsv",
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"star_salmon/log/RAP1_IAA_30M_REP1.Log.final.out",
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"star_salmon/log/RAP1_IAA_30M_REP1.Log.out",
@@ -1419,19 +1419,24 @@
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"RAP1_IAA_30M_REP1.featureCounts.tsv:md5,07bd87d86ba5c6c3ceff36518183417d",
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"RAP1_IAA_30M_REP1.featureCounts.tsv.summary:md5,a7702fa1383c26f2336fd7ed04ca4216",
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"RAP1_UNINDUCED_REP1.biotype_counts_mqc.tsv:md5,d241d50e582ceb97e6f16b3556f5f5a9",
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"WT_REP1.featureCounts.txt:md5,e64f59d719d21293627717beb76beaf5",
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"WT_REP1.featureCounts.tsv:md5,6e3a63d5609f055ce396cb648e018db4",
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"WT_REP1.featureCounts.tsv.summary:md5,d872b12bf7e48e00ebb44e9a11e54714",
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"WT_REP2.biotype_counts_mqc.tsv:md5,5cb8f29f175d07b3d8f8464bf8fcd82b",
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"WT_REP2.biotype_counts_rrna_mqc.tsv:md5,12294618fe44df1e7f39348372dcb481",
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"WT_REP2.featureCounts.txt:md5,0f3ed14df2ca681161c63aed8e6a7c7c",
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"WT_REP2.featureCounts.tsv:md5,350ab8987337f4c7510801c0cc404ad8",
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"WT_REP2.featureCounts.tsv.summary:md5,9924ccf94b6feeabb0ad88e56febfd2e",
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"RAP1_IAA_30M_REP1.SJ.out.tab:md5,ea95e243278af55534f2c52eb5fff7ee",
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"RAP1_UNINDUCED_REP1.SJ.out.tab:md5,e548d13942535dc0821f3ec6d9743ec8",
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"RAP1_UNINDUCED_REP2.SJ.out.tab:md5,1f294365343a1a5e95682792fdb77033",
@@ -1484,6 +1489,6 @@
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"nf-test": "0.9.2",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-06-03T17:06:24.279292365"
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"timestamp": "2025-06-04T11:15:07.425006953"
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}
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}

‎tests/hisat2.nf.test.snap‎

Lines changed: 21 additions & 16 deletions
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"hisat2/featurecounts",
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"hisat2/featurecounts/RAP1_IAA_30M_REP1.featureCounts.txt",
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"hisat2/featurecounts/RAP1_IAA_30M_REP1.featureCounts.txt.summary",
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"hisat2/featurecounts/RAP1_IAA_30M_REP1.featureCounts.tsv",
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"hisat2/featurecounts/RAP1_IAA_30M_REP1.featureCounts.tsv.summary",
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"hisat2/featurecounts/RAP1_UNINDUCED_REP1.featureCounts.tsv",
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"hisat2/featurecounts/RAP1_UNINDUCED_REP2.featureCounts.txt.summary",
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"hisat2/featurecounts/RAP1_UNINDUCED_REP2.featureCounts.tsv",
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"hisat2/featurecounts/RAP1_UNINDUCED_REP2.featureCounts.tsv.summary",
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"hisat2/featurecounts/WT_REP2.featureCounts.txt.summary",
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"hisat2/featurecounts/WT_REP2.featureCounts.tsv",
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"hisat2/featurecounts/WT_REP2.featureCounts.tsv.summary",
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"hisat2/log/RAP1_IAA_30M_REP1.hisat2.summary.log",
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"hisat2/log/RAP1_UNINDUCED_REP1.hisat2.summary.log",
@@ -1207,19 +1207,24 @@
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"WT_REP2_dupMatrix.txt:md5,5176c7447c4295f94e2683dd9995cea0",
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"RAP1_IAA_30M_REP1.biotype_counts_mqc.tsv:md5,cd7494b3bb12295a287f36506638f3c6",
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"RAP1_IAA_30M_REP1.featureCounts.tsv.summary:md5,932ed219cddbb3bb4425839d73f4dfd6",
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"WT_REP1.featureCounts.tsv.summary:md5,b500ebe796000deb52011691545257be",
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"WT_REP2.featureCounts.txt:md5,efa5c0e711a3e0bdd42035be239e04a2",
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"WT_REP2.featureCounts.tsv:md5,947b8b919223a184bf8f8201d90ca8f6",
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"WT_REP2.featureCounts.tsv.summary:md5,8c9a3099292bc7545136c868a4ade730",
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"coverage_profile_along_genes_(high).txt:md5,b56043c3546cac003461c57abad93536",
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"coverage_profile_along_genes_(total).txt:md5,1b55d86defcc541643137497c4c6bb06",
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"nf-test": "0.9.2",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-06-03T17:40:30.487659861"
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"timestamp": "2025-06-04T11:42:03.435738205"
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}
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}

‎tests/kallisto.nf.test.snap‎

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},
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"timestamp": "2025-01-28T13:50:34.753130451"
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}
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}
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}

‎tests/min_mapped_reads.nf.test.snap‎

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"RAP1_UNINDUCED_REP1.featureCounts.txt:md5,a8ad2573b09fbef181d2d5792a74dbd4",
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"RAP1_UNINDUCED_REP1.featureCounts.tsv:md5,cb48d282dde8d10d5e4b1680e1a79ef4",
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"RAP1_UNINDUCED_REP1.featureCounts.tsv.summary:md5,2b834f8b69c28d80ccfc51440bc693ff",
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"RAP1_UNINDUCED_REP2.featureCounts.txt:md5,c97046671b304b69811872854c361450",
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"RAP1_UNINDUCED_REP2.featureCounts.tsv:md5,5c96326d9edb98d18322d506394dda1a",
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"RAP1_UNINDUCED_REP2.featureCounts.tsv.summary:md5,1c69f066c7457c2633f4f90f322744fc",
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"nf-test": "0.9.2",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-06-04T12:03:12.434653114"
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},
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"Params: --min_mapped_reads 90 - stub": {
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"content": [

‎tests/nofasta.nf.test.snap‎

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"timestamp": "2025-06-03T15:07:19.746620782"
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}
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}
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}

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