Bump bbmap in snaps

pinin4fjords · pinin4fjords · commit efa6fa134df9 · 2025-06-04T10:57:17.000Z
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
@@ -4,7 +4,7 @@
             27,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
@@ -108,7 +108,7 @@
             209,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "BEDTOOLS_GENOMECOV_FW": {
                     "bedtools": "2.31.1"
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
@@ -4,7 +4,7 @@
             27,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
@@ -108,7 +108,7 @@
             199,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "BEDTOOLS_GENOMECOV_FW": {
                     "bedtools": "2.31.1"
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
@@ -4,7 +4,7 @@
             28,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
@@ -109,7 +109,7 @@
             200,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "BEDTOOLS_GENOMECOV_FW": {
                     "bedtools": "2.31.1"
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
@@ -4,7 +4,7 @@
             48,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
@@ -282,7 +282,7 @@
             22,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
@@ -4,7 +4,7 @@
             163,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "BEDTOOLS_GENOMECOV_FW": {
                     "bedtools": "2.31.1"
@@ -1198,7 +1198,7 @@
             27,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
@@ -4,7 +4,7 @@
             220,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "BEDTOOLS_GENOMECOV_FW": {
                     "bedtools": "2.31.1"
@@ -1407,7 +1407,7 @@
             28,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
@@ -4,7 +4,7 @@
             47,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
@@ -358,7 +358,7 @@
             21,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
@@ -4,7 +4,7 @@
             22,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
@@ -94,7 +94,7 @@
             147,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "BEDTOOLS_GENOMECOV_FW": {
                     "bedtools": "2.31.1"
diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
@@ -4,7 +4,7 @@
             199,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "BEDTOOLS_GENOMECOV_FW": {
                     "bedtools": "2.31.1"
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
@@ -4,7 +4,7 @@
             201,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "BEDTOOLS_GENOMECOV_FW": {
                     "bedtools": "2.31.1"
@@ -1294,7 +1294,7 @@
             27,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5
diff --git a/tests/umi.nf.test.snap b/tests/umi.nf.test.snap
@@ -2739,7 +2739,7 @@
             32,
             {
                 "BBMAP_BBSPLIT": {
-                    "bbmap": 39.1
+                    "bbmap": 39.18
                 },
                 "CAT_FASTQ": {
                     "cat": 9.5

Original file line number	Diff line number	Diff line change
`@@ -4,7 +4,7 @@`
`4`	`4`	`199,`
`5`	`5`	`{`
`6`	`6`	`"BBMAP_BBSPLIT": {`
`7`		`- "bbmap": 39.1`
	`7`	`+ "bbmap": 39.18`
`8`	`8`	`},`
`9`	`9`	`"BEDTOOLS_GENOMECOV_FW": {`
`10`	`10`	`"bedtools": "2.31.1"`