Fix minor umi dedup log issue

pinin4fjords · pinin4fjords · commit f67ae86288c7 · 2024-12-19T12:53:02.000Z
diff --git a/workflows/rnaseq/nextflow.config b/workflows/rnaseq/nextflow.config
@@ -140,12 +140,7 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
                     [
                         path: { "${params.outdir}/${params.aligner}/umitools" },
                         mode: params.publish_dir_mode,
-                        pattern: '*.tsv'
-                    ],
-                    [
-                        path: { "${params.outdir}/${params.aligner}/umitools/transcriptomic_dedup_log" },
-                        mode: params.publish_dir_mode,
-                        pattern: '*.log'
+                        pattern: '*.{log,tsv}'
                     ],
                     [
                         path: { params.save_align_intermeds || params.save_umi_intermeds ? "${params.outdir}/${params.aligner}" : params.outdir },

Original file line number	Diff line number	Diff line change
`@@ -140,12 +140,7 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {`
`140`	`140`	`[`
`141`	`141`	`path: { "${params.outdir}/${params.aligner}/umitools" },`
`142`	`142`	`mode: params.publish_dir_mode,`
`143`		`- pattern: '*.tsv'`
`144`		`- ],`
`145`		`- [`
`146`		`- path: { "${params.outdir}/${params.aligner}/umitools/transcriptomic_dedup_log" },`
`147`		`- mode: params.publish_dir_mode,`
`148`		`- pattern: '*.log'`
	`143`	`+ pattern: '*.{log,tsv}'`
`149`	`144`	`],`
`150`	`145`	`[`
`151`	`146`	`path: { params.save_align_intermeds \|\| params.save_umi_intermeds ? "${params.outdir}/${params.aligner}" : params.outdir },`