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Add option for rundir input types #11

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Add option for rundir input types #11

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a82fdf7
Add option for rundir input types
mahesh-panchal Mar 20, 2024
f20bef9
Fix pattern
mahesh-panchal Mar 20, 2024
dc4397b
Update error message position
mahesh-panchal Mar 20, 2024
fcac2c5
Move meta field
mahesh-panchal Mar 20, 2024
25d4e99
Allow white space in names and directories
mahesh-panchal Apr 16, 2024
13af4a8
Empty-Commit
mahesh-panchal Apr 16, 2024
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26 changes: 18 additions & 8 deletions assets/schema_input.json
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Original file line number Diff line number Diff line change
Expand Up @@ -29,21 +29,31 @@
"type": "string",
"format": "file-path",
"exists": true,
"pattern": "^\\S+\\.f(ast)?q\\.gz$",
"errorMessage": "FastQ file for reads 1 must be provided, cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
"pattern": "\\.f(ast)?q\\.gz$",
"errorMessage": "FastQ file for reads 1 must be provided and must have extension '.fq.gz' or '.fastq.gz'"
},
"fastq_2": {
"type": "string",
"format": "file-path",
"exists": true,
"pattern": "^\\S+\\.f(ast)?q\\.gz$",
"errorMessage": "FastQ file for reads 2 cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
"pattern": "\\.f(ast)?q\\.gz$",
"errorMessage": "FastQ file for reads 2 is optional and must have extension '.fq.gz' or '.fastq.gz' if provided"
},
"rundir": {
"type": "string",
"format": "path",
"exists": true,
"errorMessage": "Run directory must be a path",
"oneOf": [
{
"type": "string",
"format": "file-path",
"exists": true,
"pattern": "\\.tar\\.gz$"
},
{
"type": "string",
"format": "directory-path",
"exists": true
}
],
"errorMessage": "Run directory must be a path or tar directory",
"meta": ["rundir"]
}
},
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