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Change resource allocations #115

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cfd3050
Update base.config
YukWoon Mar 25, 2025
e0c9ddc
Update test.config
YukWoon Mar 25, 2025
fa90ca0
Update base.config
YukWoon Mar 26, 2025
95975c2
Update main.nf
YukWoon Mar 26, 2025
8b70893
Update main.nf
YukWoon Mar 26, 2025
5391189
Update main.nf
YukWoon Mar 26, 2025
44d1d86
Update base.config
YukWoon Mar 26, 2025
76d9fb0
Update test.config
YukWoon Mar 26, 2025
1829a10
Update base.config
YukWoon Mar 26, 2025
24132d4
Update main.nf
YukWoon Mar 26, 2025
20ee4b1
Update main.nf
YukWoon Mar 26, 2025
0f08884
Update test.config
YukWoon Mar 26, 2025
2ac0008
Update base.config
YukWoon Mar 26, 2025
e64c517
reverting to original
YukWoon Mar 26, 2025
886ce50
reverting to original
YukWoon Mar 26, 2025
ac044f1
reverting to original
YukWoon Mar 26, 2025
f9bedc6
Update base.config for resource allocations
YukWoon Mar 26, 2025
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24 changes: 12 additions & 12 deletions conf/base.config
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Original file line number Diff line number Diff line change
Expand Up @@ -11,9 +11,9 @@
process {

// TODO nf-core: Check the defaults for all processes
cpus = { 1 * task.attempt }
cpus = { 2 * task.attempt }
memory = { 6.GB * task.attempt }
time = { 4.h * task.attempt }
time = { 10.m * task.attempt }

errorStrategy = { task.exitStatus in ((130..145) + 104) ? 'retry' : 'finish' }
maxRetries = 1
Expand All @@ -28,23 +28,23 @@ process {
// See https://www.nextflow.io/docs/latest/config.html#config-process-selectors
withLabel:process_single {
cpus = { 1 }
memory = { 6.GB * task.attempt }
time = { 4.h * task.attempt }
memory = { 1.GB * task.attempt }
time = { 10.m * task.attempt }
}
withLabel:process_low {
cpus = { 2 * task.attempt }
memory = { 12.GB * task.attempt }
time = { 4.h * task.attempt }
memory = { 2.GB * task.attempt }
time = { 10.m * task.attempt }
}
withLabel:process_medium {
cpus = { 6 * task.attempt }
memory = { 36.GB * task.attempt }
time = { 8.h * task.attempt }
cpus = { 2 * task.attempt }
memory = { 4.GB * task.attempt }
time = {10.m * task.attempt }
}
withLabel:process_high {
cpus = { 12 * task.attempt }
memory = { 72.GB * task.attempt }
time = { 16.h * task.attempt }
cpus = { 2 * task.attempt }
memory = { 16.GB * task.attempt }
time = { 30.m * task.attempt }
}
withLabel:process_long {
time = { 20.h * task.attempt }
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6 changes: 3 additions & 3 deletions conf/test.config
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Original file line number Diff line number Diff line change
Expand Up @@ -12,9 +12,9 @@

process {
resourceLimits = [
cpus: 4,
memory: '15.GB',
time: '1.h'
cpus: 2,
memory: '2.GB',
time: '10.m'
]
}

Expand Down