Zenodo

CHANGELOG.md

@@ -39,6 +39,7 @@ Initial release of nf-core/seqinspector, created with the [nf-core](https://nf-c
 - [#168](https://github.com/nf-core/seqinspector/pull/168) Add contributors list
 - [#168](https://github.com/nf-core/seqinspector/pull/168) Add logo to the pipeline logo
 - [#174](https://github.com/nf-core/seqinspector/pull/174) Add nf-core-utils 0.4.0
+- [#180](https://github.com/nf-core/seqinspector/pull/180) Add Zenodo record
 
 ### `Fixed`
 

README.md

@@ -7,7 +7,7 @@
 
 [![Open in GitHub Codespaces](https://img.shields.io/badge/Open_In_GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core/seqinspector)
 [![GitHub Actions CI Status](https://github.com/nf-core/seqinspector/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/seqinspector/actions/workflows/nf-test.yml)
-[![GitHub Actions Linting Status](https://github.com/nf-core/seqinspector/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/seqinspector/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/seqinspector/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![GitHub Actions Linting Status](https://github.com/nf-core/seqinspector/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/seqinspector/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/seqinspector/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.18757486-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.18757486)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
 [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.2-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
@@ -136,7 +136,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `#
 
 ## Citations
 
-<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->
+You can cite the seqinspector zenodo record for a specific version using the following [doi: 10.5281/zenodo.18757486](https://doi.org/10.5281/zenodo.18757486)
 
 An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.
 

nextflow.config

@@ -406,7 +406,7 @@ manifest {
     defaultBranch   = 'master'
     nextflowVersion = '!>=25.10.2'
     version         = '1.0.0'
-    doi             = ''
+    doi             = '10.5281/zenodo.18757486'
 }
 
 // Nextflow plugins

tests/NovaSeq6000.nf.test.snap

@@ -1003,6 +1003,8 @@
                 "  configFiles               : [PATH]/nextflow.config, [PATH]/nextflow.config, [PATH]/tests/nextflow.config",
                 "!! Only displaying parameters that differ from the pipeline defaults !!",
                 "------------------------------------------------------",
+                "* The pipeline",
+                "    https://doi.org/10.5281/zenodo.18757486",
                 "* The nf-core framework",
                 "    https://doi.org/10.1038/s41587-020-0439-x",
                 "* Software dependencies",
@@ -1048,7 +1050,7 @@
                 "[NXF_HASH] Submitted process > PREPARE_GENOME:SAMTOOLS_FAIDX (genome.fa)"
             ]
         ],
-        "timestamp": "2026-02-20T14:19:24.909594023",
+        "timestamp": "2026-02-24T13:33:04.718407731",
         "meta": {
             "nf-test": "0.9.4",
             "nextflow": "25.10.4"