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.nf-core.yml

@@ -21,4 +21,4 @@ template:
   name: seqinspector
   org: nf-core
   outdir: .
-  version: 1.0.0
+  version: 1.1.0dev

CHANGELOG.md

@@ -3,6 +3,21 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## dev
+
+### `Added`
+
+### `Fixed`
+
+### `Changed`
+
+- [#180](https://github.com/nf-core/seqinspector/pull/180) Add Zenodo record
+- [#181](https://github.com/nf-core/seqinspector/pull/181) Back to dev
+
+### `Dependencies`
+
+### `Deprecated`
+
 ## [1.0.0](https://github.com/nf-core/seqinspector/releases/tag/1.0.0) - Inspector Gadget
 
 Initial release of nf-core/seqinspector, created with the [nf-core](https://nf-co.re/) template.

README.md

@@ -7,7 +7,7 @@
 
 [![Open in GitHub Codespaces](https://img.shields.io/badge/Open_In_GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core/seqinspector)
 [![GitHub Actions CI Status](https://github.com/nf-core/seqinspector/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/seqinspector/actions/workflows/nf-test.yml)
-[![GitHub Actions Linting Status](https://github.com/nf-core/seqinspector/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/seqinspector/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/seqinspector/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![GitHub Actions Linting Status](https://github.com/nf-core/seqinspector/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/seqinspector/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/seqinspector/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.18757486-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.18757486)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
 [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.2-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
@@ -45,9 +45,9 @@ If provided, nf-core/seqinspector can also parse statistics from an Illumina run
 ### Workflow diagram
 
 <picture>
-  <source media="(prefers-color-scheme: dark)" srcset="docs/images/seqinspector_tubemap_V1.0_dark.png">
-  <source media="(prefers-color-scheme: light)" srcset="docs/images/seqinspector_tubemap_V1.0.png">
-  <img alt="Fallback image description" src="docs/images/seqinspector_tubemap_V1.0.png">
+  <source media="(prefers-color-scheme: dark)" srcset="docs/images/seqinspector_tubemap_dark.png">
+  <source media="(prefers-color-scheme: light)" srcset="docs/images/seqinspector_tubemap_light.png">
+  <img alt="Fallback image description" src="docs/images/seqinspector_tubemap_light.png">
 </picture>
 
 ### Summary of tools and version used in the pipeline
@@ -136,7 +136,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `#
 
 ## Citations
 
-<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->
+You can cite the seqinspector zenodo record for a specific version using the following [doi: 10.5281/zenodo.18757486](https://doi.org/10.5281/zenodo.18757486)
 
 An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.
 

assets/multiqc_config.yml

@@ -1,5 +1,5 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/seqinspector/releases/tag/1.0.0" target="_blank">nf-core/seqinspector</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/seqinspector/1.0.0/docs/output" target="_blank">documentation</a>.
+  This report has been generated by the <a href="https://github.com/nf-core/seqinspector/tree/dev" target="_blank">nf-core/seqinspector</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/seqinspector/dev/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-seqinspector-index":
     order: -999

nextflow.config

@@ -405,8 +405,8 @@ manifest {
     mainScript      = 'main.nf'
     defaultBranch   = 'master'
     nextflowVersion = '!>=25.10.2'
-    version         = '1.0.0'
-    doi             = ''
+    version         = '1.1.0dev'
+    doi             = '10.5281/zenodo.18757486'
 }
 
 // Nextflow plugins