apply Oscar's suggestions

josephmje · oesteban · commit 67416c900227 · 2019-12-12T14:58:49.000-08:00
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -7,5 +7,5 @@ include versioneer.py
 include dmriprep/_version.py
 
 # data
-include dmriprep/reports/dmriprep.yml
-include dmriprep/reports/report.tpl
+include dmriprep/config/reports-spec.yml
+include dmriprep/config/report.tpl
diff --git a/dmriprep/cli/run.py b/dmriprep/cli/run.py
@@ -385,7 +385,7 @@ def main():
         # Generate reports phase
         failed_reports = generate_reports(
             subject_list, output_dir, work_dir, run_uuid,
-            config=pkgrf('dmriprep', 'reports/dmriprep.yml'),
+            config=pkgrf('dmriprep', 'config/reports-spec.yml'),
             packagename='dmriprep')
         write_derivative_description(bids_dir, output_dir / 'dmriprep')
 
@@ -533,7 +533,7 @@ def build_workflow(opts, retval):
             retval['run_uuid'] = run_uuid
         retval['return_code'] = generate_reports(
             subject_list, output_dir, work_dir, run_uuid,
-            config=pkgrf('dmriprep', 'reports/dmriprep.yml'),
+            config=pkgrf('dmriprep', 'config/reports-spec.yml'),
             packagename='dmriprep')
         return retval
 
diff --git a/dmriprep/config/report.tpl b/dmriprep/config/report.tpl
@@ -11,37 +11,44 @@
 <style type="text/css">
 .sub-report-title {}
 .run-title {}
+
 h1 { padding-top: 35px; }
 h2 { padding-top: 20px; }
 h3 { padding-top: 15px; }
+
 .elem-desc {}
 .elem-caption {
     margin-top: 15px
     margin-bottom: 0;
 }
 .elem-filename {}
+
 div.elem-image {
   width: 100%;
   page-break-before:always;
 }
+
 .elem-image object.svg-reportlet {
     width: 100%;
     padding-bottom: 5px;
 }
 body {
     padding: 65px 10px 10px;
 }
+
 .boiler-html {
     font-family: "Bitstream Charter", "Georgia", Times;
     margin: 20px 25px;
     padding: 10px;
     background-color: #F8F9FA;
 }
+
 div#boilerplate pre {
     margin: 20px 25px;
     padding: 10px;
     background-color: #F8F9FA;
 }
+
 </style>
 </head>
 <body>
diff --git a/dmriprep/config/reports-spec.yml b/dmriprep/config/reports-spec.yml
diff --git a/dmriprep/reports/__init__.py b/dmriprep/reports/__init__.py
diff --git a/setup.cfg b/setup.cfg
@@ -83,8 +83,8 @@ all =
 dmriprep =
     VERSION
     data/boilerplate.bib
-    reports/dmriprep.yml
-    reports/report.tpl
+    config/reports-spec.yml
+    config/report.tpl
 
 [options.entry_points]
 console_scripts =
