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Co-authored-by: Ariel Rokem <[email protected]>
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docs/source/usage.rst

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@@ -10,9 +10,9 @@ Before moving forward, please make sure to have read and understood
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*NiPreps*'s
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`introductory documentation <https://www.nipreps.org/apps/framework/>`__).
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Containerized execution with *Docker* and *Singularity*
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Containerized execution with *Docker* and *Singularity*/*Apptainer*
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-------------------------------------------------------
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For containerized execution with *Docker* or *Singularity*, please
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For containerized execution with *Docker* or *Singularity*/*Apptainer*, please
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follow the documentation on the *NiPreps* site, which contains
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tip and troubleshooting guidelines for both
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`Docker <https://www.nipreps.org/apps/docker/>`__, and
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*MRIQC* can fetch data in *DataLad* datasets
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--------------------------------------------
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As of *MRIQC* 22.0.3, the application bundles *DataLad*, enabling automatic
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As of version 22.0.3, *MRIQC* bundles *DataLad*, enabling automatic
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data fetching in *DataLad* datasets.
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Employing this feature in containerized environments may lead to
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somewhat obscure errors (see, for example,
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``--no-datalad-get`` to the command line.
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This will separate *DataLad* management from *MRIQC*'s operation,
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which can be an effective way of debugging issues and averting
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fault conditions.
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erroneous conditions.
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Command line interface
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----------------------

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