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@mgxd mgxd commented Mar 12, 2025

Adds logic to restructure workflow output to be more easily consumed by the HBCD data management system.

This new command line option, nibabies-hbcd, restructure FreeSurfer and mcribs output directories to follow the BIDS hierarchy (from sub-X_ses-Y to sub-X/ses-Y) and removes any symlinks.

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codecov bot commented Mar 12, 2025

Codecov Report

❌ Patch coverage is 75.84270% with 43 lines in your changes missing coverage. Please review.
✅ Project coverage is 56.90%. Comparing base (aaa532c) to head (739f460).
⚠️ Report is 90 commits behind head on master.

Files with missing lines Patch % Lines
nibabies/cli/parser.py 61.00% 34 Missing and 5 partials ⚠️
nibabies/cli/hbcd.py 91.66% 2 Missing and 2 partials ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #454      +/-   ##
==========================================
+ Coverage   56.46%   56.90%   +0.44%     
==========================================
  Files          70       72       +2     
  Lines        6723     6801      +78     
  Branches      828      837       +9     
==========================================
+ Hits         3796     3870      +74     
- Misses       2718     2720       +2     
- Partials      209      211       +2     

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@mgxd mgxd added the stale label Apr 10, 2025
@mgxd mgxd closed this Jun 24, 2025
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