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fix: Support sdcflows@main and smriprep >=0.18 #462

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Merged
merged 2 commits into from
May 15, 2025
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fix: Support sdcflows@main and smriprep >=0.18 #462

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6ae2cb3
fix: sdcflows@main
effigies May 15, 2025
a70b9ee
fix: Implement private function _collate locally
effigies May 15, 2025
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6 changes: 5 additions & 1 deletion nibabies/workflows/anatomical/resampling.py
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
import templateflow.api as tf
from niworkflows.engine.workflows import LiterateWorkflow
from smriprep.interfaces.workbench import SurfaceResample
from smriprep.workflows.surfaces import _collate, init_morph_grayords_wf
from smriprep.workflows.surfaces import init_morph_grayords_wf

from nibabies.config import DEFAULT_MEMORY_MIN_GB
from nibabies.data import load as load_data
Expand Down Expand Up @@ -296,3 +296,7 @@ def _get_surf(surfaces, name, mult=1):

def _triple(in_list):
return in_list * 3


def _collate(files):
return [files[i : i + 2] for i in range(0, len(files), 2)]
2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -34,7 +34,7 @@ dependencies = [
"pybids >= 0.15.0",
"requests",
"SimpleITK",
"sdcflows @ git+https://github.com/nipreps/sdcflows.git@master",
"sdcflows @ git+https://github.com/nipreps/sdcflows.git@main",
"smriprep >= 0.17.0",
"tedana >= 23.0.2",
"templateflow >= 24.2.0",
Expand Down