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FIX: Fix FD plot function call in BOLD fMRI realignment notebook #121

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merged 1 commit into from
May 14, 2025
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FIX: Fix FD plot function call in BOLD fMRI realignment notebook #121

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17 changes: 5 additions & 12 deletions docs/notebooks/bold_realignment.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -164,21 +164,15 @@
"afni_realigned"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {},
"outputs": [],
"source": [
"from matplotlib import pyplot as plt"
]
},
{
"cell_type": "code",
"execution_count": 43,
"metadata": {},
"outputs": [],
"source": [
"import pandas as pd\n",
"from matplotlib import pyplot as plt\n",
"\n",
"from nifreeze.viz.motion_viz import plot_framewise_displacement\n",
"\n",
"\n",
Expand Down Expand Up @@ -264,10 +258,9 @@
" )\n",
"\n",
" # Plot the framewise displacement on the first axis\n",
" fd = pd.DataFrame({\"afni\": afni_fd, \"nifreeze\": nifreeze_fd})\n",
" fd_axis = axes[0]\n",
" _ = plot_framewise_displacement(\n",
" afni_fd, nifreeze_fd, \"AFNI 3dVolreg FD\", \"nifreeze FD\", ax=fd_axis\n",
" )\n",
" _ = plot_framewise_displacement(fd, [\"AFNI 3dVolreg FD\", \"nifreeze FD\"], ax=fd_axis)\n",
"\n",
" # Set labels for profile plots if not provided\n",
" if labels is None or isinstance(labels, str):\n",
Expand Down