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15 changes: 15 additions & 0 deletions niworkflows/reports/fmriprep.yml
Original file line number Diff line number Diff line change
Expand Up @@ -64,6 +64,21 @@ sections:
desc: '[at]compcor'
extensions: [.html]
suffix: bold
- bids: {datatype: func, desc: '[at]compcorvar', suffix: bold}
caption: The cumulative variance explained by the first k components of the
<em>t/aCompCor</em> decomposition, plotted for all values of <em>k</em>.
The number of components that must be included in the model in order to
explain some fraction of variance in the decomposition mask can be used
as a feature selection criterion for confound regression.
- bids: {datatype: func, desc: 'confoundcorr', suffix: bold}
caption: |
Left: Heatmap summarizing the correlation structure among confound variables.
(Cosine bases and PCA-derived CompCor components are inherently orthogonal.)
Right: magnitude of the correlation between each confound time series and the
mean global signal. Strong correlations might be indicative of partial volume
effects and can inform decisions about feature orthogonalization prior to
confound regression.
subtitle: Correlations among nuisance regressors
- bids: {datatype: func, desc: flirtnobbr, suffix: bold}
caption: FSL <code>flirt</code> was used to generate transformations from EPI
space to T1 Space - BBR refinement rejected. Note that Nearest Neighbor interpolation
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