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MAINT: Finalize upstreaming of ants interfaces to nipype #550

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Merged
merged 2 commits into from
Aug 14, 2020
Merged

MAINT: Finalize upstreaming of ants interfaces to nipype #550

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73ba567
chore(deps): update nipype pinning to the adequate PR
oesteban Aug 12, 2020
5839ca2
enh: update imports to pull from nipype
oesteban Aug 12, 2020
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2 changes: 1 addition & 1 deletion docs/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
git+https://github.com/AleksandarPetrov/napoleon.git@0dc3f28a309ad602be5f44a9049785a1026451b3#egg=sphinxcontrib-napoleon
git+https://github.com/rwblair/sphinxcontrib-versioning.git@39b40b0b84bf872fc398feff05344051bbce0f63#egg=sphinxcontrib-versioning
nbsphinx
nipype>=1.3.1
git+https://github.com/nipy/nipype.git@master#egg=nipype
nitransforms >= 20.0.0rc3,<20.2
packaging
pydot>=1.2.3
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16 changes: 9 additions & 7 deletions niworkflows/anat/ants.py
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Expand Up @@ -13,18 +13,20 @@
from nipype.pipeline import engine as pe
from nipype.interfaces import utility as niu
from nipype.interfaces.fsl.maths import ApplyMask
from nipype.interfaces.ants import N4BiasFieldCorrection, Atropos, MultiplyImages
from nipype.interfaces.ants import (
AI,
Atropos,
ImageMath,
MultiplyImages,
N4BiasFieldCorrection,
ResampleImageBySpacing,
ThresholdImage,
)

from ..utils.misc import get_template_specs
from ..utils.connections import pop_file as _pop

# niworkflows
from ..interfaces.ants import (
ImageMath,
ResampleImageBySpacing,
AI,
ThresholdImage,
)
from ..interfaces.fixes import (
FixHeaderRegistration as Registration,
FixHeaderApplyTransforms as ApplyTransforms,
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2 changes: 1 addition & 1 deletion niworkflows/func/util.py
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Expand Up @@ -6,11 +6,11 @@

from nipype.pipeline import engine as pe
from nipype.interfaces import utility as niu, fsl, afni
from nipype.interfaces.ants.utils import AI

from templateflow.api import get as get_template

from ..engine.workflows import LiterateWorkflow as Workflow
from ..interfaces.ants import AI
from ..interfaces.fixes import (
FixHeaderRegistration as Registration,
FixHeaderApplyTransforms as ApplyTransforms,
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