chore: Drop Python 3.9 and numpy 1.x support

Author: effigies

.github/workflows/build-test-publish.yml

@@ -65,24 +65,24 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
         dependencies:  ["latest", "pre"]
         marks: ["fast"]
         include:
-          - python-version: "3.9"
+          - python-version: "3.10"
             dependencies: "min"
             marks: "fast"
-          - python-version: "3.9"
+          - python-version: "3.10"
             dependencies: "latest"
             marks: "slow"
-          - python-version: "3.12"
+          - python-version: "3.13"
             dependencies: "latest"
             marks: "veryslow"
         exclude:
-          - python-version: "3.9"
-            dependencies: "pre"
           - python-version: "3.10"
             dependencies: "pre"
+          - python-version: "3.11"
+            dependencies: "pre"
 
     steps:
     - uses: actions/checkout@v5

pyproject.toml

@@ -13,27 +13,26 @@ classifiers = [
     "Topic :: Scientific/Engineering :: Image Recognition",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
     "License :: OSI Approved :: Apache Software License",
-    "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
     "Programming Language :: Python :: 3.13",
 ]
 license = "Apache-2.0"
-requires-python = ">=3.9"
+requires-python = ">=3.10"
 dependencies = [
     "acres >= 0.2.0",
     "attrs >= 20.1.0",
-    "nibabel >= 3.0",
-    "nipype >= 1.8.5",
+    "nibabel >= 5.1.1",
+    "nipype >= 1.9.0",
     "migas >= 0.4.0",
     "nireports >= 25.0.1",
     "niworkflows >= 1.11.0",
     "nitransforms >= 25.0.1",
-    "numpy >= 1.23",
+    "numpy >= 2.0",
     "pybids >= 0.16.4",
-    "scikit-image >= 0.18",
-    "scipy >= 1.8.1",
+    "scikit-image >= 0.23",
+    "scipy >= 1.10",
     "templateflow >= 23.1",
     "toml >= 0.10",
 ]
@@ -70,8 +69,8 @@ dev = [
 ]
 
 test = [
-    "coverage[toml] >=5.2.1",
-    "pytest >= 6",
+    "coverage[toml] >=7",
+    "pytest >= 8",
     "pytest-cov >= 2.11",
     "pytest-env",
     "pytest-xdist >= 2.5",