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@oesteban oesteban changed the title ENH: Large refactor of the orchestration workflow [wipe phdiff_*] ENH: Large refactor of the orchestration workflow Nov 20, 2019
This PR:
  - [x] Refines the work in nipreps#53 addressing nipreps#40.
  - [x] Adds tests to cover the orchestration workflow.
  - [x] Fixes nipreps#7 (added regression tests for this bug).
  - [x] Updates the interface of phdiff workflows: removes the metadata
        input, which was defined for this workflow solely.
  - [x] Makes it trivial to extend the phdiff workflow to phase1/phase2
        workflows (nipreps#15).
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Phase difference field maps fail if BOLD is missing PhaseEncodingDirection metadata
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