[WIP] Add state/mappers to new workflow syntax#2648

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djarecka wants to merge 57 commits intonipy:enh/workflow_syntaxfrom

djarecka:effigies-enh/workflow_syntax

Commits on Jul 10, 2018

Merge branch 'enh/workflow_syntax' of https://github.com/effigies/nipype into effigies-enh/workflow_syntax
djarecka
committed

Commits on Jul 12, 2018

Adding auxiliary and state from nipype2_tmp
djarecka
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Commits on Jul 13, 2018

updating exceptions and __init__; updating logger to the current version in nipype
djarecka
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starting updating NewNode using mapper and state from nipype2_tmp; changing State.state_value so it returns values (and not arrays)
djarecka
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Commits on Jul 14, 2018

adding simple tests
djarecka
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Commits on Jul 15, 2018

Commits on Jul 17, 2018

Commits on Jul 22, 2018

moving many attributes from NewNodeBase/NewNodeCore to NewNode, so I can use it for NewWorkflow; creating prepare_state_input in State from the __init__, so I can initialize State before having input
djarecka
committed

Commits on Jul 25, 2018

Merge remote-tracking branch 'upstream/enh/workflow_syntax' into effigies-enh/workflow_syntax
effigies
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Commits on Jul 26, 2018

[wip] rearranging classes - showing the problem with cf/dask when passisng node=self to SumitterNode
djarecka
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Commits on Jul 27, 2018

Revert "[wip] rearranging classes - showing the problem with cf/dask when passisng node=self to SumitterNode"
djarecka
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Commits on Jul 30, 2018

rearranging classes, NewNode and NewWorkflow inherit from NewBase; fixing problem with run method in Node when running with mp, cf or dask (submitter shouldnt be a class attr)
djarecka
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Commits on Jul 31, 2018

Commits on Aug 15, 2018

Commits on Sep 4, 2018

Commits on Sep 5, 2018

[skip ci] adding example from #2539 (not running yet); small changes in deepcopy of node
djarecka
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Commits on Sep 19, 2018

Commits on Sep 24, 2018

Commits on Sep 30, 2018

Commits on Oct 1, 2018

adding inputs and imports to newnode_nero
djarecka
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Commits on Oct 3, 2018

introducing workflows that can be treated as a node: adding results, checking inputs/outputs, changing submitter; finishing mapper for workflow: adding inner nodes, parent workflow is used to colle…
djarecka
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Commits on Oct 4, 2018

Commits on Oct 5, 2018

adding wrapper to the current interfaces (with simple tests for bet); adding flag that says if values or indecies are used in directories names and output
djarecka
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Commits on Oct 6, 2018

updating wf.add method to include nipype interfaces
djarecka
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Commits on Oct 8, 2018