FIX: Update mne.WatershedBEM command line

nipype/algorithms/tests/test_auto_AddCSVRow.py

@@ -6,7 +6,10 @@
 def test_AddCSVRow_inputs():
     input_map = dict(
         _outputs=dict(usedefault=True, ),
-        in_file=dict(mandatory=True, ),
+        in_file=dict(
+            extensions=None,
+            mandatory=True,
+        ),
     )
     inputs = AddCSVRow.input_spec()
 

nipype/algorithms/tests/test_auto_Gunzip.py

@@ -4,11 +4,10 @@
 
 
 def test_Gunzip_inputs():
-    input_map = dict(
-        in_file=dict(
-            extensions=None,
-            mandatory=True,
-        ), )
+    input_map = dict(in_file=dict(
+        extensions=None,
+        mandatory=True,
+    ), )
     inputs = Gunzip.input_spec()
 
     for key, metadata in list(input_map.items()):

nipype/algorithms/tests/test_auto_NonSteadyStateDetector.py

@@ -4,11 +4,10 @@
 
 
 def test_NonSteadyStateDetector_inputs():
-    input_map = dict(
-        in_file=dict(
-            extensions=None,
-            mandatory=True,
-        ), )
+    input_map = dict(in_file=dict(
+        extensions=None,
+        mandatory=True,
+    ), )
     inputs = NonSteadyStateDetector.input_spec()
 
     for key, metadata in list(input_map.items()):

nipype/interfaces/afni/tests/test_auto_Allineate.py

@@ -86,6 +86,7 @@ def test_Allineate_inputs():
         ),
         out_weight_file=dict(
             argstr='-wtprefix %s',
+            extensions=None,
             xor=['allcostx'],
         ),
         outputtype=dict(),

nipype/interfaces/afni/tests/test_auto_Cat.py

@@ -21,10 +21,9 @@ def test_Cat_inputs():
             usedefault=True,
         ),
         omitconst=dict(argstr='-nonconst', ),
-        out_cint=dict(
-            xor=[
-                'out_format', 'out_nice', 'out_double', 'out_fint', 'out_int'
-            ], ),
+        out_cint=dict(xor=[
+            'out_format', 'out_nice', 'out_double', 'out_fint', 'out_int'
+        ], ),
         out_double=dict(
             argstr='-d',
             xor=['out_format', 'out_nice', 'out_int', 'out_fint', 'out_cint'],

nipype/interfaces/afni/tests/test_auto_ClipLevel.py

@@ -17,6 +17,7 @@ def test_ClipLevel_inputs():
         ),
         grad=dict(
             argstr='-grad %s',
+            extensions=None,
             position=3,
             xor='doall',
         ),

nipype/interfaces/afni/tests/test_auto_LocalBistat.py

@@ -26,7 +26,10 @@ def test_LocalBistat_inputs():
             mandatory=True,
             position=-1,
         ),
-        mask_file=dict(argstr='-mask %s', ),
+        mask_file=dict(
+            argstr='-mask %s',
+            extensions=None,
+        ),
         neighborhood=dict(
             argstr="-nbhd '%s(%s)'",
             mandatory=True,
@@ -37,6 +40,7 @@ def test_LocalBistat_inputs():
         ),
         out_file=dict(
             argstr='-prefix %s',
+            extensions=None,
             keep_extension=True,
             name_source='in_file1',
             name_template='%s_bistat',
@@ -49,6 +53,7 @@ def test_LocalBistat_inputs():
         ),
         weight_file=dict(
             argstr='-weight %s',
+            extensions=None,
             xor=['automask'],
         ),
     )

nipype/interfaces/afni/tests/test_auto_Localstat.py

@@ -21,7 +21,10 @@ def test_Localstat_inputs():
             mandatory=True,
             position=-1,
         ),
-        mask_file=dict(argstr='-mask %s', ),
+        mask_file=dict(
+            argstr='-mask %s',
+            extensions=None,
+        ),
         neighborhood=dict(
             argstr="-nbhd '%s(%s)'",
             mandatory=True,
@@ -33,6 +36,7 @@ def test_Localstat_inputs():
         ),
         out_file=dict(
             argstr='-prefix %s',
+            extensions=None,
             keep_extension=True,
             name_source='in_file',
             name_template='%s_localstat',

nipype/interfaces/afni/tests/test_auto_NwarpApply.py

@@ -20,7 +20,10 @@ def test_NwarpApply_inputs():
             usedefault=True,
         ),
         inv_warp=dict(argstr='-iwarp', ),
-        master=dict(argstr='-master %s', ),
+        master=dict(
+            argstr='-master %s',
+            extensions=None,
+        ),
         out_file=dict(
             argstr='-prefix %s',
             extensions=None,

nipype/interfaces/afni/tests/test_auto_OneDToolPy.py

@@ -30,6 +30,7 @@ def test_OneDToolPy_inputs():
         show_censor_count=dict(argstr='-show_censor_count', ),
         show_cormat_warnings=dict(
             argstr='-show_cormat_warnings |& tee %s',
+            extensions=None,
             position=-1,
             xor=['out_file'],
         ),

nipype/interfaces/afni/tests/test_auto_Qwarp.py

@@ -125,7 +125,10 @@ def test_Qwarp_inputs():
             name_source=['in_file'],
             name_template='ppp_%s',
         ),
-        out_weight_file=dict(argstr='-wtprefix %s', ),
+        out_weight_file=dict(
+            argstr='-wtprefix %s',
+            extensions=None,
+        ),
         outputtype=dict(),
         overwrite=dict(argstr='-overwrite', ),
         pblur=dict(argstr='-pblur %s', ),

nipype/interfaces/afni/tests/test_auto_QwarpPlusMinus.py

@@ -125,7 +125,10 @@ def test_QwarpPlusMinus_inputs():
             position=0,
             usedefault=True,
         ),
-        out_weight_file=dict(argstr='-wtprefix %s', ),
+        out_weight_file=dict(
+            argstr='-wtprefix %s',
+            extensions=None,
+        ),
         outputtype=dict(),
         overwrite=dict(argstr='-overwrite', ),
         pblur=dict(argstr='-pblur %s', ),

nipype/interfaces/afni/tests/test_auto_ROIStats.py

@@ -49,7 +49,10 @@ def test_ROIStats_inputs():
             position=-1,
         ),
         quiet=dict(argstr='-quiet', ),
-        roisel=dict(argstr='-roisel %s', ),
+        roisel=dict(
+            argstr='-roisel %s',
+            extensions=None,
+        ),
         stat=dict(argstr='%s...', ),
         zerofill=dict(
             argstr='-zerofill %s',

nipype/interfaces/afni/tests/test_auto_ReHo.py

@@ -25,13 +25,17 @@ def test_ReHo_inputs():
             argstr='-in_rois %s',
             extensions=None,
         ),
-        mask_file=dict(argstr='-mask %s', ),
+        mask_file=dict(
+            argstr='-mask %s',
+            extensions=None,
+        ),
         neighborhood=dict(
             argstr='-nneigh %s',
             xor=['sphere', 'ellipsoid'],
         ),
         out_file=dict(
             argstr='-prefix %s',
+            extensions=None,
             keep_extension=True,
             name_source='in_file',
             name_template='%s_reho',

nipype/interfaces/afni/tests/test_auto_Remlfit.py

@@ -58,6 +58,7 @@ def test_Remlfit_inputs():
         ),
         matim=dict(
             argstr='-matim %s',
+            extensions=None,
             xor=['matrix'],
         ),
         matrix=dict(

nipype/interfaces/afni/tests/test_auto_Resample.py

@@ -17,7 +17,10 @@ def test_Resample_inputs():
             mandatory=True,
             position=-1,
         ),
-        master=dict(argstr='-master %s', ),
+        master=dict(
+            argstr='-master %s',
+            extensions=None,
+        ),
         num_threads=dict(
             nohash=True,
             usedefault=True,

nipype/interfaces/afni/tests/test_auto_TCorrMap.py

@@ -93,7 +93,10 @@ def test_TCorrMap_inputs():
             name_source='in_file',
             suffix='_qmean',
         ),
-        regress_out_timeseries=dict(argstr='-ort %s', ),
+        regress_out_timeseries=dict(
+            argstr='-ort %s',
+            extensions=None,
+        ),
         seeds=dict(
             argstr='-seed %s',
             extensions=None,

nipype/interfaces/afni/tests/test_auto_Zeropad.py

@@ -55,6 +55,7 @@ def test_Zeropad_inputs():
         ),
         master=dict(
             argstr='-master %s',
+            extensions=None,
             xor=['I', 'S', 'A', 'P', 'L', 'R', 'z', 'RL', 'AP', 'IS', 'mm'],
         ),
         mm=dict(

nipype/interfaces/ants/tests/test_auto_ANTS.py

@@ -57,8 +57,8 @@ def test_ANTS_inputs():
         regularization=dict(argstr='%s', ),
         regularization_deformation_field_sigma=dict(
             requires=['regularization'], ),
-        regularization_gradient_field_sigma=dict(
-            requires=['regularization'], ),
+        regularization_gradient_field_sigma=dict(requires=['regularization'
+                                                           ], ),
         smoothing_sigmas=dict(
             argstr='--gaussian-smoothing-sigmas %s',
             sep='x',

nipype/interfaces/ants/tests/test_auto_AntsJointFusion.py

@@ -44,11 +44,10 @@ def test_AntsJointFusion_inputs():
             nohash=True,
             usedefault=True,
         ),
-        out_atlas_voting_weight_name_format=dict(
-            requires=[
-                'out_label_fusion', 'out_intensity_fusion_name_format',
-                'out_label_post_prob_name_format'
-            ], ),
+        out_atlas_voting_weight_name_format=dict(requires=[
+            'out_label_fusion', 'out_intensity_fusion_name_format',
+            'out_label_post_prob_name_format'
+        ], ),
         out_intensity_fusion_name_format=dict(argstr='', ),
         out_label_fusion=dict(
             argstr='%s',

nipype/interfaces/ants/tests/test_auto_Atropos.py

@@ -53,8 +53,8 @@ def test_Atropos_inputs():
         prior_probability_threshold=dict(requires=['prior_weighting'], ),
         prior_weighting=dict(),
         save_posteriors=dict(),
-        use_mixture_model_proportions=dict(
-            requires=['posterior_formulation'], ),
+        use_mixture_model_proportions=dict(requires=['posterior_formulation'
+                                                     ], ),
         use_random_seed=dict(
             argstr='--use-random-seed %d',
             usedefault=True,

nipype/interfaces/base/tests/test_auto_StdOutCommandLine.py

@@ -12,6 +12,7 @@ def test_StdOutCommandLine_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py

@@ -50,6 +50,7 @@ def test_AnalyzeHeader_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py

@@ -24,6 +24,7 @@ def test_ComputeEigensystem_inputs():
         maxcomponents=dict(argstr='-maxcomponents %d', ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py

@@ -20,6 +20,7 @@ def test_ComputeFractionalAnisotropy_inputs():
         inputmodel=dict(argstr='-inputmodel %s', ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py

@@ -20,6 +20,7 @@ def test_ComputeTensorTrace_inputs():
         inputmodel=dict(argstr='-inputmodel %s', ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_DTIFit.py

@@ -26,6 +26,7 @@ def test_DTIFit_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_DTLUTGen.py

@@ -28,6 +28,7 @@ def test_DTLUTGen_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py

@@ -40,6 +40,7 @@ def test_FSL2Scheme_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_Image2Voxel.py

@@ -18,6 +18,7 @@ def test_Image2Voxel_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_LinRecon.py

@@ -24,6 +24,7 @@ def test_LinRecon_inputs():
         normalize=dict(argstr='-normalize', ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_MESD.py

@@ -42,6 +42,7 @@ def test_MESD_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_ModelFit.py

@@ -34,6 +34,7 @@ def test_ModelFit_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py

@@ -26,6 +26,7 @@ def test_NIfTIDT2Camino_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_PicoPDFs.py

@@ -36,6 +36,7 @@ def test_PicoPDFs_inputs():
         ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),

nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py

@@ -62,6 +62,7 @@ def test_ProcStreamlines_inputs():
         noresample=dict(argstr='-noresample', ),
         out_file=dict(
             argstr='> %s',
+            extensions=None,
             genfile=True,
             position=-1,
         ),