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Enh/wait #3089

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Merged
merged 7 commits into from
Nov 8, 2019
Merged

Enh/wait #3089

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d5d22be
ENH: Always fsync pickle files
effigies Oct 26, 2019
a07c138
ENH: Add sync option to savepkl, sync when saving result file
effigies Oct 29, 2019
e97b7f9
add delay to read results
satra Nov 5, 2019
ead9032
fix: config call and gzipped write
satra Nov 6, 2019
78f03e9
Update nipype/utils/filemanip.py
satra Nov 6, 2019
c956c8d
fix: replace glob with file exists check
satra Nov 6, 2019
e572991
enh: refactor saving based on feedback
satra Nov 7, 2019
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8 changes: 4 additions & 4 deletions nipype/pipeline/engine/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -236,17 +236,17 @@ def save_resultfile(result, cwd, name, rebase=None):

if result.outputs is None:
logger.warning('Storing result file without outputs')
savepkl(resultsfile, result)
savepkl(resultsfile, result, sync=True)
return
try:
output_names = result.outputs.copyable_trait_names()
except AttributeError:
logger.debug('Storing non-traited results, skipping rebase of paths')
savepkl(resultsfile, result)
savepkl(resultsfile, result, sync=True)
return

if not rebase:
savepkl(resultsfile, result)
savepkl(resultsfile, result, sync=True)
return

backup_traits = {}
Expand All @@ -262,7 +262,7 @@ def save_resultfile(result, cwd, name, rebase=None):
backup_traits[key] = old
val = rebase_path_traits(result.outputs.trait(key), old, cwd)
setattr(result.outputs, key, val)
savepkl(resultsfile, result)
savepkl(resultsfile, result, sync=True)
finally:
# Restore resolved paths from the outputs dict no matter what
for key, val in list(backup_traits.items()):
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