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Merged
merged 3 commits into from
May 31, 2025
Merged

chore: Fix doc builds and pacify linter #238

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6116491
doc: Update and simplify RTD config
effigies May 31, 2025
9a2b333
sty: Remove unused global variables
effigies May 31, 2025
f6e870a
doc: Update CI badge
effigies May 31, 2025
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14 changes: 6 additions & 8 deletions .readthedocs.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,12 +10,10 @@ build:
- asdf plugin add uv
- asdf install uv latest
- asdf global uv latest
# Turn `python -m virtualenv` into `python -c pass`
- truncate --size 0 $( dirname $( uv python find ) )/../lib/python3*/site-packages/virtualenv/__main__.py
post_create_environment:
create_environment:
- uv venv $READTHEDOCS_VIRTUALENV_PATH
# Turn `python -m pip` into `python -c pass`
- truncate --size 0 $( ls -d $READTHEDOCS_VIRTUALENV_PATH/lib/python3* )/site-packages/pip.py
post_install:
- VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH uv pip install --cache-dir $READTHEDOCS_VIRTUALENV_PATH/../../uv_cache .[niftiext]
- VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH uv pip install --cache-dir $READTHEDOCS_VIRTUALENV_PATH/../../uv_cache -r docs/requirements.txt
install:
- VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH uv pip install --cache-dir $READTHEDOCS_VIRTUALENV_PATH/../../uv_cache .[niftiext] -r docs/requirements.txt

sphinx:
configuration: docs/conf.py
2 changes: 1 addition & 1 deletion README.md
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@@ -1,7 +1,7 @@
# NiTransforms
[![DOI](https://joss.theoj.org/papers/10.21105/joss.03459/status.svg)](https://doi.org/10.21105/joss.03459)
[![ISBI2020](https://img.shields.io/badge/doi-10.31219%2Fosf.io%2F8aq7b-blue.svg)](https://doi.org/10.31219/osf.io/8aq7b)
[![Deps & CI](https://github.com/nipy/nitransforms/actions/workflows/travis.yml/badge.svg)](https://github.com/nipy/nitransforms/actions/workflows/travis.yml)
[![Deps & CI](https://github.com/nipy/nitransforms/actions/workflows/tox.yml/badge.svg)](https://github.com/nipy/nitransforms/actions/workflows/tox.yml)
[![CircleCI](https://circleci.com/gh/nipy/nitransforms.svg?style=svg)](https://circleci.com/gh/nipy/nitransforms)
[![codecov](https://codecov.io/gh/nipy/nitransforms/branch/master/graph/badge.svg)](https://codecov.io/gh/nipy/nitransforms)
[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/nipy/nitransforms/master?filepath=docs%2Fnotebooks%2F)
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11 changes: 0 additions & 11 deletions nitransforms/conftest.py
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Expand Up @@ -6,8 +6,6 @@
import pytest
import tempfile

_data = None
_brainmask = None
_testdir = Path(os.getenv("TEST_DATA_HOME", "~/.nitransforms/testdata")).expanduser()
_datadir = Path(__file__).parent / "tests" / "data"

Expand Down Expand Up @@ -48,22 +46,13 @@ def testdata_path():
@pytest.fixture
def get_testdata():
"""Generate data in the requested orientation."""
global _data

if _data is not None:
return _data

return _reorient(_testdir / "someones_anatomy.nii.gz")


@pytest.fixture
def get_testmask():
"""Generate data in the requested orientation."""
global _brainmask

if _brainmask is not None:
return _brainmask

return _reorient(_testdir / "someones_anatomy_brainmask.nii.gz")


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