21.0.0

Release Notes

A first release of NiTransforms. This release accompanies a corresponding JOSS submission.

CHANGES

• FIX: Final edits to JOSS submission (#135)
• FIX: Add mention to potential alternatives in JOSS submission (#132)
• FIX: Misinterpretation of voxel ordering in LTAs (#129)
• FIX: Suggested edits to the JOSS submission (#121)
• FIX: Invalid DOI (#124)
• FIX: Remove the --inv flag from regression mri_vol2vol regression test (#78)
• FIX: Improve handling of optional fields in LTA (#65)
• FIX: LTA conversions (#36)
• ENH: Add more comprehensive comments to notebook (#134)
• ENH: Add an .asaffine() member to TransformChain (#90)
• ENH: Read (and apply) ITK/ANTs' composite HDF5 transforms (#79)
• ENH: Improved testing of LTA handling - ITK-to-LTA, mri_concatenate_lta (#75)
• ENH: Add FS transform regression (#74)
• ENH: Add ITK-LTA conversion test (#66)
• ENH: Support for transforms mappings (e.g., head-motion correction) (#59)
• ENH: command line interface (#55)
• ENH: Facilitate loading of displacements field transforms (#54)
• ENH: First implementation of AFNI displacement fields (#50)
• ENH: Base implementation of transforms chains (composition) (#43)
• ENH: First implementation of loading and applying ITK displacements fields (#42)
• ENH: Refactor of AFNI and FSL I/O with StringStructs (#39)
• ENH: More comprehensive implementation of ITK affines I/O (#35)
• ENH: Added some minimal test-cases to the Affine class (#33)
• ENH: Rewrite load/save utilities for ITK's MatrixOffsetBased transforms in io (#31)
• ENH: Rename resample() with apply() (#30)
• ENH: Write tests pulling up the coverage of base submodule (#28)
• ENH: Add tests and implementation for Displacements fields and refactor linear accordingly (#27)
• ENH: Uber-refactor of code style, method names, etc. (#24)
• ENH: Increase coverage of linear transforms code (#23)
• ENH: FreeSurfer LTA file support (#17)
• ENH: Use obliquity directly from nibabel (#18)
• ENH: Setting up a battery of tests (#9)
• ENH: Revise doctests and get them ready for more thorough testing. (#10)
• DOC: Add Zenodo metadata record (#136)
• DOC: Better document the IPython notebooks (#133)
• DOC: Transfer CoC from NiBabel (#131)
• DOC: Clarify integration plans with NiBabel in the README (#128)
• DOC: Add contributing page to RTD (#130)
• DOC: Add CONTRIBUTING.md file pointing at NiBabel (#127)
• DOC: Add example notebooks to sphinx documentation (#126)
• DOC: Add an Installation section (#122)
• DOC: Display API per module (#120)
• DOC: Add figure to JOSS draft / Add @smoia to author list (#61)
• DOC: Initial JOSS draft (#47)
• MAINT: Add imports of modules in __init__.py to workaround #91 (#92)
• MAINT: Fix missing python3 binary on CircleCI build job step (#85)
• MAINT: Use setuptools_scm to manage versioning (#83)
• MAINT: Split binary test-data out from gh repo (#84)
• MAINT: Add Docker image/circle build (#80)
• MAINT: Drop Python 3.5 (#77)
• MAINT: Better config on setup.py (binary operator starting line) (#60)
• MAINT: add docker build to travis matrix (#29)
• MAINT: testing coverage (#16)
• MAINT: pep8 complaints (#14)
• MAINT: skip unfinished implementation tests (#15)
• MAINT: pep8speaks (#13)