[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -2,14 +2,14 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.3.0
+    rev: v6.0.0
     hooks:
     -   id: trailing-whitespace
     -   id: end-of-file-fixer
     -   id: check-yaml
     -   id: check-added-large-files
--   repo: https://github.com/psf/black
-    rev: 22.6.0
+-   repo: https://github.com/psf/black-pre-commit-mirror
+    rev: 25.9.0
     hooks:
     -   id: black
         exclude: (_version\.py|versioneer\.py)

pydra/tasks/mrtrix3/__init__.py

@@ -2,4 +2,5 @@
 >>> import pydra
 >>> import pydra.tasks.mrtrix3
 """
+
 from ._version import __version__

pydra/tasks/mrtrix3/v3_1/mredit.py

@@ -58,13 +58,13 @@ class MrEdit(shell.Task["MrEdit.Outputs"]):
         help="""fill one or more planes on a particular image axis""",
         sep=" ",
     )
-    sphere: MultiInputObj[
-        tuple[list[float], list[float], list[float]]
-    ] | None = shell.arg(
-        default=None,
-        argstr="-sphere",
-        help="""draw a sphere with radius in mm""",
-        sep=" ",
+    sphere: MultiInputObj[tuple[list[float], list[float], list[float]]] | None = (
+        shell.arg(
+            default=None,
+            argstr="-sphere",
+            help="""draw a sphere with radius in mm""",
+            sep=" ",
+        )
     )
     voxel: MultiInputObj[tuple[list[float], list[float]]] | None = shell.arg(
         default=None,

pydra/tasks/mrtrix3/v3_1/mrregister.py

@@ -427,17 +427,17 @@ class Outputs(shell.Outputs):
             path_template="transformed.mif",
             help="""image1 after registration transformed and regridded to the space of image2. Note that -transformed needs to be repeated for each contrast if multi-contrast registration is used.""",
         )
-        transformed_midway: MultiInputObj[
-            tuple[ImageOut, ImageOut]
-        ] | bool | None = shell.outarg(
-            default=None,
-            argstr="-transformed_midway",
-            path_template=(
-                "transformed_midway0.mif",
-                "transformed_midway1.mif",
-            ),
-            help="""image1 and image2 after registration transformed and regridded to the midway space. Note that -transformed_midway needs to be repeated for each contrast if multi-contrast registration is used.""",
-            sep=" ",
+        transformed_midway: MultiInputObj[tuple[ImageOut, ImageOut]] | bool | None = (
+            shell.outarg(
+                default=None,
+                argstr="-transformed_midway",
+                path_template=(
+                    "transformed_midway0.mif",
+                    "transformed_midway1.mif",
+                ),
+                help="""image1 and image2 after registration transformed and regridded to the midway space. Note that -transformed_midway needs to be repeated for each contrast if multi-contrast registration is used.""",
+                sep=" ",
+            )
         )
         rigid: File | bool | None = shell.outarg(
             default=None,