[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -9,7 +9,7 @@ repos:
           - id: check-yaml
           - id: check-added-large-files
     - repo: https://github.com/psf/black-pre-commit-mirror
-      rev: 25.11.0
+      rev: 26.1.0
       hooks:
           - id: black
     - repo: https://github.com/codespell-project/codespell
@@ -23,7 +23,7 @@ repos:
       hooks:
           - id: flake8
     - repo: https://github.com/kynan/nbstripout
-      rev: 0.8.2
+      rev: 0.9.1
       hooks:
           - id: nbstripout
             files: \.(ipynb)$

docs/source/conf.py

@@ -17,7 +17,6 @@
 
 from pydra.utils import __version__  # noqa
 
-
 authors = [("Nipype developers", "neuroimaging@python.org")]
 
 # If extensions (or modules to document with autodoc) are in another directory,

pydra/compose/base/helpers.py

@@ -7,7 +7,6 @@
 from pydra.utils.general import get_fields
 from .field import Field, Arg, Out, NO_DEFAULT
 
-
 if ty.TYPE_CHECKING:
     from .task import Task, Outputs
 

pydra/compose/base/task.py

@@ -21,7 +21,6 @@
 from pydra.utils.hash import Cache, hash_single, register_serializer
 from .field import Field, Arg, Out
 
-
 if ty.TYPE_CHECKING:
     from pydra.engine.job import Job
     from pydra.environments.base import Environment

pydra/compose/shell/tests/conftest.py

@@ -1,7 +1,6 @@
 from pathlib import Path
 import pytest
 
-
 try:
     import importlib_resources
 except ImportError:

pydra/compose/shell/tests/test_shell_run.py

@@ -3527,11 +3527,9 @@ def test_shellcommand_error_msg(tmp_path):
     script_path = Path(tmp_path) / "script.sh"
 
     with open(script_path, "w") as f:
-        f.write(
-            """#!/bin/bash
+        f.write("""#!/bin/bash
                 echo "first line is ok, it prints '$1'"
-                /command-that-doesnt-exist"""
-        )
+                /command-that-doesnt-exist""")
 
     os.chmod(
         script_path,
@@ -3563,8 +3561,7 @@ class Outputs(shell.Outputs):
     path_str = str(script_path)
 
     assert (
-        str(excinfo.value)
-        == f"""Error running 'main' job with ['{path_str}', 'hello']:
+        str(excinfo.value) == f"""Error running 'main' job with ['{path_str}', 'hello']:
 
 stderr:
 {path_str}: line 3: /command-that-doesnt-exist: No such file or directory

pydra/compose/tests/test_python_fields.py

@@ -6,7 +6,6 @@
 from pydra.utils.general import get_fields
 from pydra.compose import python
 
-
 sort_key = attrgetter("name")
 
 

pydra/engine/__init__.py

@@ -2,5 +2,4 @@
 
 from .submitter import Submitter
 
-
 __all__ = ["Submitter"]

pydra/engine/graph.py

@@ -7,7 +7,6 @@
 import subprocess as sp
 from pydra.utils.general import ensure_list, is_workflow
 
-
 NodeType = ty.TypeVar("NodeType")
 
 INPUTS_NODE_NAME = "__INPUTS__"

pydra/engine/state.py

@@ -8,7 +8,6 @@
 from pydra.utils.typing import StateArray, TypeParser
 from pydra.utils.general import ensure_list, attrs_values
 
-
 logger = logging.getLogger("pydra")
 
 

pydra/engine/tests/test_error_handling.py

@@ -7,7 +7,6 @@
 from pydra.compose import python, workflow
 from pydra.engine.submitter import Submitter
 
-
 no_win = pytest.mark.skipif(
     sys.platform.startswith("win"),
     reason="docker/singularity command not adjusted for windows",

pydra/engine/tests/test_hooks.py

@@ -8,7 +8,6 @@
 from pydra.engine.submitter import Submitter
 from pydra.engine.job import Job
 
-
 no_win = pytest.mark.skipif(
     sys.platform.startswith("win"),
     reason="docker/singularity command not adjusted for windows",

pydra/environments/lmod.py

@@ -10,7 +10,6 @@
 from pydra.environments import base
 from pydra.utils.general import ensure_list
 
-
 logger = logging.getLogger("pydra")
 
 if ty.TYPE_CHECKING:

pydra/environments/tests/test_lmod.py

@@ -34,16 +34,14 @@ def create_module(
     module_dir.mkdir(parents=True)
 
     with open(module_dir / f"{version}.lua", "w") as f:
-        f.write(
-            f"""
+        f.write(f"""
         -- -*- lua -*-
 help([===[
 ----------------------------------
 ## {name}/{version} ##
 A {name} command
 ----------------------------------
-]===])"""
-        )
+]===])""")
         f.write(module_src)
     return f"{name}/{version}"
 

pydra/utils/general.py

@@ -20,7 +20,6 @@
 import pydra.scripts
 from ._version import __version__
 
-
 logger = logging.getLogger("pydra")
 if ty.TYPE_CHECKING:
     from pydra.compose.base import Task, Field  # noqa

pydra/workers/slurm.py

@@ -11,7 +11,6 @@
 from pydra.engine.job import Job, save
 from pydra.workers import base
 
-
 logger = logging.getLogger("pydra.worker")
 
 if ty.TYPE_CHECKING: