Skip to content

Navigation Menu

Appearance settings

GitHub Copilot
Write better code with AI

GitHub Spark New
Build and deploy intelligent apps

GitHub Models New
Manage and compare prompts

GitHub Advanced Security
Find and fix vulnerabilities

Actions
Automate any workflow
Codespaces
Instant dev environments

Issues
Plan and track work

Code Review
Manage code changes

Discussions
Collaborate outside of code

Code Search
Find more, search less
Explore

Why GitHub

Documentation

GitHub Skills

Blog
Integrations

GitHub Marketplace

MCP Registry
View all features
By company size

Enterprises

Small and medium teams

Startups

Nonprofits
By use case

App Modernization

DevSecOps

DevOps

CI/CD

View all use cases
By industry

Healthcare

Financial services

Manufacturing

Government

View all industries
View all solutions
Topics

AI

DevOps

Security

Software Development

View all
Explore

Learning Pathways

Events & Webinars

Ebooks & Whitepapers

Customer Stories

Partners

Executive Insights
GitHub Sponsors
Fund open source developers
The ReadME Project
GitHub community articles
Repositories

Topics

Trending

Collections
Enterprise platform
AI-powered developer platform
Available add-ons

GitHub Advanced Security
Enterprise-grade security features

Copilot for business
Enterprise-grade AI features

Premium Support
Enterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

nmdp-bioinformatics / nmdp-python-project-template Public template

Notifications You must be signed in to change notification settings
Fork 2
Star 2

Code
Issues
Pull requests
Actions
Projects
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Projects
Security
Insights

Upgrade to Modern Python#4

Merged

pbashyal-nmdp merged 14 commits intomasternmdp-bioinformatics/nmdp-python-project-template:masterfrom

pyproject.toml-upgradenmdp-bioinformatics/nmdp-python-project-template:pyproject.toml-upgradeCopy head branch name to clipboard

Sep 10, 2025

Conversation Commits14 (14)Checks Files changed

Merged

Upgrade to Modern Python#4
pbashyal-nmdp merged 14 commits intomasterfrom
pyproject.toml-upgrade

Commits

Commits on Sep 5, 2025

Created pyproject.toml and removed setup.py
pbashyal-nmdp
committed
Remove requirement*.txt files
pbashyal-nmdp
committed
Add 'Bump My Version' config
pbashyal-nmdp
committed
Update all the versions to the latest
pbashyal-nmdp
committed
Make flask work with api-spec
pbashyal-nmdp
committed
Docker support
pbashyal-nmdp
committed
Removed HISTORY file
pbashyal-nmdp
committed

Commits on Sep 9, 2025

package in src/ and Docker build
pbashyal-nmdp
committed
Update dockerfile and project
pbashyal-nmdp
committed

Commits on Sep 10, 2025

Merge branch 'master' into pyproject.toml-upgrade
pbashyal-nmdp
authored
Update all the versions to the latest
pbashyal-nmdp
committed
Make flask work with api-spec
pbashyal-nmdp
committed
Use uv in GitHub Action
pbashyal-nmdp
committed
Use ruff instead of black in CI
pbashyal-nmdp
committed

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.