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Fix issue when floating point numbers are present in batch #340

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Merged
merged 1 commit into from
Jan 17, 2025
Merged

Fix issue when floating point numbers are present in batch #340

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10 changes: 9 additions & 1 deletion scripts/pyard-reduce-csv
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Original file line number Diff line number Diff line change
Expand Up @@ -121,7 +121,15 @@ def redux(allele, locus, column_name):
if ":" in allele:
locus_allele = f"{locus}*{allele}"
else:
locus_allele = f"{locus}{allele}" # serology
if allele.isnumeric():
# Serology alleles are all numeric
locus_allele = f"{locus}{allele}" # serology
else:
# Watch out, we may get floats when exported from Excel.
message = f"Failed reducing '{allele}' in column {column_name}"
print(message)
failed_to_reduce_alleles.append((column_name, allele))
return allele

# Check the config if this allele should be reduced
if should_be_reduced(allele, locus_allele):
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