Switch to Pixi

.github/workflows/test.yml

@@ -23,10 +23,10 @@ jobs:
           file: Dockerfile
           load: true
       - name: Run ruff check
-        run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run ruff check
+        run: docker run --rm ${{ steps.build.outputs.imageid }} ruff check
       - name: Run format check
-        run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run ruff format --check
+        run: docker run --rm ${{ steps.build.outputs.imageid }} ruff format --check
       - name: Run mypy
-        run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run mypy .
+        run: docker run --rm ${{ steps.build.outputs.imageid }} mypy .
       - name: Run tests
-        run: docker run --rm -e GALAXY_URL=${{ env.GALAXY_URL }} -e GALAXY_API_KEY=${{ env.GALAXY_API_KEY }} ${{ steps.build.outputs.imageid }} poetry run pytest test_examples.py
+        run: docker run --rm -e GALAXY_URL=${{ env.GALAXY_URL }} -e GALAXY_API_KEY=${{ env.GALAXY_API_KEY }} ${{ steps.build.outputs.imageid }} pytest test_examples.py

.pre-commit-config.yaml

@@ -20,7 +20,7 @@ repos:
   hooks:
     - id: mypy
       name: mypy
-      entry: poetry run mypy .
+      entry: pixi run mypy .
       language: system
       types: [python]
       verbose: true

Dockerfile

@@ -7,17 +7,17 @@ RUN apt update && apt install -y \
     libx11-dev \
     libxrender1
 
-ENV POETRY_HOME=/poetry
-ENV PATH=/poetry/bin:$PATH
-RUN curl -sSL https://install.python-poetry.org | python3 -
+RUN curl -fsSL https://pixi.sh/install.sh | sh
+ENV PATH="/root/.pixi/bin:${PATH}"
 
 RUN mkdir -p /opt/run/examples
 COPY examples/ /opt/run/examples/
 COPY tests/ /opt/run/
 COPY pyproject.toml /opt/run/pyproject.toml
-COPY poetry.lock /opt/run/poetry.lock
 
 WORKDIR /opt/run
-RUN poetry install
+RUN pixi install
+SHELL [ "pixi", "run" ]
+ENTRYPOINT [ "pixi", "run" ]
 
 CMD []

README.md

@@ -27,20 +27,19 @@ We also provide examples that take advantage of ORNL resources:
 
 ## Running Examples
 
-If you want to run the examples, then you will need to install [Poetry](https://python-poetry.org/). Once done, run the following to run an example.
+If you want to run the examples, then you will need to install [Pixi](https://pixi.sh/latest/). Once done, run the following to run an example.
 
 ```bash
-poetry install
-poetry run python examples/{example_folder}/main.py
+pixi install
+pixi run python -m examples.{example_folder}
 ```
 
 ## Running Tests
 
 This repo includes an automated test to ensure that each example runs:
 
 ```bash
-poetry install
-poetry run pytest
+pixi run pytest
 ```
 
 You can set the environment variable `INCLUDE_ORNL_TESTS=1` if you want to test the examples that rely on specific ORNL resources. Note that you will need to run them from a location that has access to these resources.

examples/complex_pydantic_rules/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/conditional_disabling/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/conditional_rendering/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/data_selector/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/dialog/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/dynamic_pydantic_rules/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/matplotlib/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/multitab/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/ornl/neutron_data_selector/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/ornl/oncat/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/plotly/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/pydantic_form/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/pydantic_form_with_options/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/pydantic_monaco/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/run_galaxy_tool/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/run_galaxy_workflow/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

examples/vtk/__main__.py

@@ -0,0 +1,5 @@
+"""Entrypoint."""
+
+from .main import main
+
+main()

pyproject.toml

@@ -1,18 +1,20 @@
-[tool.poetry]
+[project]
 name = "nova-examples"
 version = "0.1.0"
 description = "NOVA Examples"
 authors = []
 license = "MIT"
 keywords = ["Galaxy", "NOVA", "python"]
+requires-python = ">=3.11,<3.14"
 
-packages = [
-  { include = "examples" }
-]
+[tool.pixi.workspace]
+channels = ["conda-forge"]
+platforms = ["linux-64", "osx-64"]
 
+[tool.pixi.dependencies]
 
-[tool.poetry.dependencies]
-python = "^3.10"
+[tool.pixi.pypi-dependencies]
+nova-examples = { path = ".", editable = true }
 nova-galaxy = "*"
 nova-mvvm = "*"
 nova-trame = "*"
@@ -23,20 +25,23 @@ requests = "*"
 ruff = "*"
 trame-code = "*"
 nltk = "*"
-pillow = "^11.3.0"
-trame-vtk = "^2.9.1"
-vtk = "^9.5.2"
+pillow = ">=11.3.0"
+trame-vtk = ">=2.9.1"
+vtk = ">=9.5.2"
 
 [build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
+requires = ["hatchling"]
+build-backend = "hatchling.build"
 
+[tool.hatch.build.targets.wheel]
+packages = ["examples"]
 
 [tool.pytest.ini_options]
 python_files = ["test*.py"]
 norecursedirs = [".git", "tmp*", "_tmp*", "__pycache__"]
 
 [tool.ruff]
+extend-exclude = [".pixi"]
 line-length = 120
 
 [tool.ruff.lint]