Ignore shapely deprecation warnings from pandera; pin libs

More strictly pin numpy and pyproj, which preserves accepted calculations in tests.

We may want to update numpy and pyproj to the latest versions and accept the
computation differences, but a review of the CHANGELOGs for those projects would
be helpful.

Author: trey-stafford

pyproject.toml

@@ -24,14 +24,14 @@ classifiers = [
   "Typing :: Typed",
 ]
 dependencies = [
-  "numpy >=2.0.1",
+  "numpy ~=2.0.1",
   "earthaccess >=0.10.0",
   "pandas >=2.2",
   "h5py >=3.11",
   "gps-timemachine >=1.1.4",
-  "pyproj >=3.6.1",
+  "pyproj ~=3.6.1",
   "shapely >=2.0.5",
-  "pandera[mypy] ~= 0.20.3",
+  "pandera[mypy] ~=0.23.0",
   "pydantic >=2.8.2",
   "loguru >=0.7.2",
   "dask[dataframe] >=2024.10.0",
@@ -83,6 +83,7 @@ addopts = ["-ra", "--showlocals", "--strict-markers", "--strict-config"]
 xfail_strict = true
 filterwarnings = [
   "error",
+  "ignore:The 'shapely.geos' module is deprecated",
 ]
 log_cli_level = "INFO"