chore: bump deps

[o-murphy]

No description provided.

[gemini-code-assist]

Summary of Changes

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This pull request primarily focuses on maintaining the project's health by updating several Python package dependencies to their latest versions, ensuring compatibility and leveraging recent improvements. Additionally, it includes minor code modernization by adopting the contemporary | None syntax for type hints, enhancing code readability and consistency with modern Python standards.

Highlights

• Dependency Updates: Numerous Python package dependencies across build-system.requires, project.dependencies, tool.setuptools_dynamic_dependencies.optional-dependencies.charts, and tool.setuptools_dynamic_dependencies.optional-dependencies.dev were updated to their latest compatible versions.
• Type Hint Modernization: The typing.Optional syntax was replaced with the more modern | None union syntax in scripts/benchmark.py and tests/test_calc_serialization.py, aligning with Python 3.10+ best practices.

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Changelog

• pyproject.toml
  • Bumped tomli to >=2.4.0.
  • Bumped typing_extensions to >=4.15.0.
  • Bumped matplotlib to >=3.10.8.
  • Bumped Cython to >=3.2.4.
  • Bumped build to >=1.4.0.
  • Bumped pylint to >=4.0.5.
  • Bumped ruff to >=0.15.6.
  • Bumped cython-lint to >=0.19.0.
  • Bumped pre-commit to >=4.5.1.
  • Bumped types-deprecated to >=1.3.1.20260130.
• scripts/benchmark.py
  • Replaced Optional with | None for type hints.
  • Removed unused Optional import.
• tests/test_calc_serialization.py
  • Replaced Optional with | None for type hints.
  • Removed unused Optional import.

Ignored Files

• Ignored by pattern: .github/workflows/** (7)
  • .github/workflows/coverage.yml
  • .github/workflows/mkdocs-ci.yml
  • .github/workflows/mypy.yml
  • .github/workflows/pylint.yml
  • .github/workflows/pypi-publish.yml
  • .github/workflows/pytest-reusable.yml
  • .github/workflows/ruff.yml

Activity

• No specific activity has been recorded for this pull request yet.

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[gemini-code-assist]

Code Review

This pull request primarily updates dependency versions in pyproject.toml and modernizes type hints from Optional[Type] to Type | None in scripts/benchmark.py and tests/test_calc_serialization.py. These changes are beneficial for maintaining up-to-date dependencies and adhering to contemporary Python type hinting conventions, improving code readability and future compatibility. No issues or further improvements were identified.

[o-murphy]

Seems like done