Update ODK to 1.3.0

[shawntanzk]

ran an update to latest ODK version

[shawntanzk]

current error:

cp -r tmp/dosdp/*.yaml ../patterns/dosdp-patterns
cp: cannot stat 'tmp/dosdp/*.yaml': No such file or directory
make: *** [Makefile:479: update_patterns] Error 1
rm ../patterns/data/default/CCN202002013_class.tsv ../patterns/data/default/CCN201912[131](https://github.com/obophenotype/brain_data_standards_ontologies/runs/5481161215?check_suite_focus=true#step:7:131)_class.tsv ../patterns/data/default/CCN201912132_class.tsv ../patterns/data/default/CS1908210_class.tsv

Trying to figure out where tmp/dosdp/*.yaml comes from

[shawntanzk]

current error

make: *** [Makefile:144: reports/validate_profile_owl2dl_bdso.owl.txt] Error 1
rm ../patterns/data/default/CCN202002013_class.tsv ../patterns/data/default/CCN201912131_class.tsv ../patterns/data/default/CCN201912132_class.tsv ../patterns/data/default/CS1908210_class.tsv
Error: Process completed with exit code 2.

whole bunch of these before that:

Cannot pun between properties: <http://purl.obolibrary.org/obo/PCL_0010062> [AnnotationAssertion(<http://purl.obolibrary.org/obo/PCL_0010062> <http://purl.obolibrary.org/obo/PCL_0012584> "0.748502994"^^xsd:string) in OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/bdso.owl>) VersionIRI(<http://purl.obolibrary.org/obo/pcl/releases/2022-03-10/bdso.owl>))]

[shawntanzk]

When making reports/validate_profile_owl2dl_bdso.owl.txt in local machine:

warn [uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl] [context: ] Illegal redeclarations of entities: reuse of entity {} in punning not allowed {}
make: *** [Makefile:504: ../patterns/data/default/CCN201912132_class_homologous.ofn] Error 1