Releases: obophenotype/cell-ontology
Releases · obophenotype/cell-ontology
2025-12-17 Release
Release Notes 2025-12-17
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 3228 |
| Number of annotations on CL terms | 16661 |
| Number of synonyms | 6859 |
| Number of unique references | 1960 |
| Number of unique references in definitions | 2015 |
| Number of relationships with CL term as subject | 4826 |
| Number of cellxgene classes | 1026 |
| Number of HRA classes | 515 |
Nodes added to subset: 77
| Term | Subset |
|---|---|
| epithelial cell of early distal convoluted tubule (CL:4030016) | cellxgene_subset |
| TREM2-positive macrophage (CL:4047053) | cellxgene_subset |
| cycling stromal cell (CL:4047001) | cellxgene_subset |
| pre-theca cell (CL:4052010) | cellxgene_subset |
| diffuse bipolar 5 cell (CL:4033085) | cellxgene_subset |
| immature microglial cell (CL:0002628) | cellxgene_subset |
| epithelial cell of proximal tubule segment 2 (CL:4030010) | cellxgene_subset |
| glioblast (sensu Vertebrata) (CL:0000339) | cellxgene_subset |
| mesothelial cell of dura mater (CL:1000298) | cellxgene_subset |
| afferent neuron (CL:0000526) | cellxgene_subset |
| L6b glutamatergic neuron of the primary motor cortex (CL:4023046) | cellxgene_subset |
| memory CCR4-positive regulatory T cell (CL:0001046) | cellxgene_subset |
| mucosa-associated lymphoid tissue macrophage (CL:0000884) | cellxgene_subset |
| TAC3-positive striatal interneuron (CL:4042001) | cellxgene_subset |
| metamyelocyte (CL:0002192) | cellxgene_subset |
| adventitial fibroblast (CL:4052030) | cellxgene_subset |
| type X enteroendocrine cell (CL:0002284) | cellxgene_subset |
| cycling myeloid cell (CL:4033081) | cellxgene_subset |
| granzyme K-associated CD8 T cell (CL:4052021) | cellxgene_subset |
| retinal cell (CL:0009004) | cellxgene_subset |
| gastrointestinal tract (lamina propria) macrophage (CL:0000865) | cellxgene_subset |
| CD8aa(I) thymocyte (CL:0009068) | cellxgene_subset |
| mesenchyme condensation cell (CL:0000335) | cellxgene_subset |
| angiogenic pericyte (CL:4047012) | cellxgene_subset |
| metanephric nephron tubule epithelial cell (CL:1000123) | cellxgene_subset |
| neuromuscular junction nucleus (CL:4052025) | cellxgene_subset |
| mucous neck cell of gastric gland (CL:0002181) | cellxgene_subset |
| BEST4+ colonocyte (CL:4047052) | cellxgene_subset |
| neuroendocrine cell of epithelium of lobar bronchus (CL:4033010) | cellxgene_subset |
| kidney collecting duct alpha-intercalated cell (CL:4030015) | cellxgene_subset |
| Be cell (CL:0000968) | cellxgene_subset |
| fibroblast of gingiva (CL:0002552) | cellxgene_subset |
| Axl+ dendritic cell, human (CL:0017009) | cellxgene_subset |
| cycling plasma cell (CL:4047003) | cellxgene_subset |
| immature pericyte (CL:4047007) | cellxgene_subset |
| trabecular meshwork cell (CL:0002367) | cellxgene_subset |
| germinal center T cell (CL:0009062) | cellxgene_subset |
| cycling pulmonary alveolar type 2 cell (CL:4033080) | cellxgene_subset |
| medial ganglionic eminence derived interneuron (CL:4023063) | cellxgene_subset |
| CD34-negative, CD117-positive innate lymphoid cell, human (CL:0001072) | cellxgene_subset |
| intratelencephalic-projecting glutamatergic cortical neuron (CL:4023008) | cellxgene_subset |
| arachnoid barrier cell (CL:4023097) | cellxgene_subset |
| choroid plexus macrophage (CL:0000880) | cellxgene_subset |
| diffuse bipolar 4b cell (CL:4033096) | cellxgene_subset |
| endodermal cell (CL:0000223) | cellxgene_subset |
| glycinergic neuron (CL:1001509) | cellxgene_subset |
| mechanoreceptor cell (CL:0000199) | cellxgene_subset |
| myotendinous junction nucleus (CL:4052024) | cellxgene_subset |
| club-like cell of the urethral epithelium (CL:4032000) | cellxgene_subset |
| early colonocyte (CL:4047018) | cellxgene_subset |
| striated cell of salivary gland (CL:4052049) | cellxgene_subset |
| intermediate muscle cell (CL:0002216) | cellxgene_subset |
| CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell (CL:0001047) | cellxgene_subset |
| L3 intratelencephalic projecting glutamatergic neuron (CL:4030061) | cellxgene_subset |
| tip cell (CL:0000423) | cellxgene_subset |
| intercalated cell of salivary gland (CL:4052048) | cellxgene_subset |
| cycling basal cell (CL:4033082) | cellxgene_subset |
| migratory dendritic cell (CL:4047054) | cellxgene_subset |
| somatic stem cell (CL:0000723) | cellxgene_subset |
| kidney outer medulla collecting duct intercalated cell (CL:1000717) | cellxgene_subset |
| fibroblastic reticular cell (CL:0009101) | cellxgene_subset |
| diffuse bipolar 4a cell (CL:4033095) | cellxgene_subset |
| prostate neuroendocrine cell (CL:0017002) | cellxgene_subset |
| cardiac ventricle fibroblast (CL:2000066) | cellxgene_subset |
| type IIx muscle cell (CL:4052026) | cellxgene_subset |
| effector T cell (CL:0000911) | cellxgene_subset |
| interstitial cell (CL:4030031) | cellxgene_subset |
| spinal cord radial glial cell (CL:1000073) | cellxgene_subset |
| fetal pre-type II pulmonary alveolar epithelial cell (CL:4040003) | cellxgene_subset |
| neuronal-restricted precursor (CL:4042021) | cellxgene_subset |
| cycling T cell (CL:4033069) | cellxgene_subset |
| paraxial cell (CL:0011007) | cellxgene_subset |
| stromal cell of pancreas (CL:0002574) | cellxgene_subset |
| serotonergic neuron (CL:0000850) | cellxgene_subset |
| endothelial cell of high endothelial venule (CL:0002652) | cellxgene_subset |
| luminal endometrial multiciliated epithelial cell (CL:4030041) | cellxgene_subset |
| cycling macrophage (CL:4033076) | cellxgene_subset |
Relationships added: 75
| Subject | Predicate | Object |
|---|---|---|
| giant bipolar cell (CL:4033035) | RO:0015004 | CLM:1001265 |
| cone retinal bipolar cell (CL:0000752) | RO:0015004 | CLM:1001261 |
| IgA memory B cell (CL:0000973) | subClassOf (rdfs:subClassOf) | IgD-negative class switched memory B cell (CL:4052108) |
| diffuse bipolar 4a cell (CL:4033095) | RO:0015004 | CLM:1001246 |
| IgD-negative class switched memory B cell (CL:4052108) | subClassOf (rdfs:subClassOf) | IgD-negative memory B cell (CL:0001053) |
| OFFx cell (CL:4033036) | RO:0015004 | CLM:1001240 |
| osteochondral skeletal stem cell (CL:0020016) | subClassOf (rdfs:subClassOf) | stem cell (CL:0000034) |
| IgD-negative CD38-positive IgG memory B cell (CL:0002107) | subClassOf (rdfs:subClassOf) | IgD-negative class switched memory B cell (CL:4052108) |
| fibrochondrocyte (CL:4072104) | subClassOf (rdfs:subClassOf) | chondrocyte (CL:0000138) |
| homeostatic chondrocyte (CL:0020020) | subClassOf (rdfs:subClassOf) | chondrocyte (CL:0000138) |
| fibrochondrocyte progenitor cell (CL:0020021) | subClassOf (rdfs:subClassOf) | mesenchymal cell (CL:0008019) |
| fibrochondrocyte (CL:4072104) | RO:0002292 | PR:000003353 |
| fibrochondrocyte progenitor cell (CL:0020021) | subClassOf (rdfs:subClassOf) | progenitor cell (CL:0011026) |
| ON-blue cone bipolar cell (CL:4033019) | RO:0015004 | CLM:1001250 |
| flat midget bipolar cell (CL:4033033) | RO:0015004 | CLM:1001262 |
| effector chondrocyte (CL:0020023) | subClassOf (rdfs:subClassOf) | chondrocyte (CL:0000138) |
| osteochondral skeletal stem cell (CL:0020016) | RO:0002215 | GO:0001649 |
| alpha retinal ganglion cell ON-sustained (Mmus) (CL:0020025) | subClassOf (rdfs:subClassOf) | ON retinal ganglion cell (CL:4023032) |
| rod bipolar cell (CL:0000751) | RO:0015004 | CLM:1001251 |
| ON-blue cone bipolar cell (CL:4033019) | RO:0015004 | CLM:1001259 |
| chondrocyte (CL:0000138) | subClassOf (rdfs:subClassOf) | skeletogenic cell (CL:0007001) |
| M2 macrophage (CL:0000890) | RO:0002202 | M0 macrophage (CL:0020017) |
| diffuse bipolar 6 cell (CL:4033032) | RO:0015004 | CLM:1001257 |
| fibrochondrocyte (CL:4072104) | RO:0002292 | PR:000003264 |
| alpha retinal ganglion cell OFF-transient (Mmus) (CL:0020026) | subClassOf (rdfs:subClassOf) | OFF retinal ganglion cell (CL:4023033) |
| giant bipolar cell (CL:4033035) | RO:0015004 | CLM:1001248 |
| M0 macrophage (CL:0020017) | subClassOf (rdfs:subClassOf) | macrophage (CL:0000235) |
| diffuse bipolar 3b cell (CL:4033030) | RO:0015004 | CLM:1001253 |
| hypertrophic chondrocyte (CL:0000743) | RO:0002292 | PR:000005693 |
| hypertrophic chondrocyte (CL:0000743) | BFO:0000050 | UBERON:0008187 |
| proliferative fibrochondrocyte (CL:0020018) | subClassOf (rdfs:subClassOf) | fibrochondrocyte (CL:4072104) |
| alpha retinal ganglion cell ON-transient (Mmus) (CL:0020027) | subClassOf (rdfs:subClassOf) | ON retinal ganglion cell (CL:4023032) |
| alpha retinal ganglion cell ON-sustained (Mmus) (CL:0020025) | subClassOf (rdfs:subClassOf) | retinal ganglion cell A (CL:0004117) |
| diffuse bipolar 4a cell (CL:4033095) | RO:0015004 | CLM:1001239 |
| alpha retinal ganglion cell OFF-sustained (Mmus) (CL:0020024) | subClassOf (rdfs:subClassOf) | retinal ganglion cell A (CL:0004117) |
| cone retinal bipolar cell (CL:0000752) | RO:0015004 | CLM:1001241 |
| homeostatic chondrocyte (CL:0020020) | RO:0002215 | GO:1990079 |
| hypertrop... |
Contributors
dosumis, aleixpuigb, and 2 other contributors
Assets 59
- 2.09 MB
2025-12-17T15:46:38Z - 1010 KB
2025-12-17T15:46:38Z - 3.47 MB
2025-12-17T15:46:39Z - 70.1 KB
2025-12-17T15:46:39Z - 2.15 MB
2025-12-17T15:46:39Z - 1.01 MB
2025-12-17T15:46:40Z - 3.45 MB
2025-12-17T15:46:40Z - 70.7 KB
2025-12-17T15:46:41Z - 7.95 MB
2025-12-17T15:46:48Z - 6.54 MB
2025-12-17T15:46:14Z -
2025-12-17T15:44:22Z -
2025-12-17T15:44:22Z - Loading
2025-11-27 Release
Release Notes 2025-11-27
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 3214 |
| Number of annotations on CL terms | 16504 |
| Number of synonyms | 6821 |
| Number of unique references | 1960 |
| Number of unique references in definitions | 1978 |
| Number of relationships with CL term as subject | 4754 |
| Number of cellxgene classes | 955 |
| Number of HRA classes | 515 |
Classes added: 50
| Term |
|---|
| STRv D2 medium spiny neuron (Primate) (CL:4310138) |
| SN-VTR-HTH GATA3-TCF7L2 GABA GABAergic interneuron (Primate) (CL:4310117) |
| GPi Core neuron (Primate) (CL:4310095) |
| SN GATA3-PAX8 GABA GABAergic interneuron (Primate) (CL:4310112) |
| intrinsically photosensitive retinal ganglion cell (CL:0020014) |
| transitional principal-intercalated cell of kidney collecting duct (CL:0020015) |
| striatal SST-LYPD6-RSPO2 GABAergic interneuron (Primate) (CL:4310121) |
| STRv D1 medium spiny neuron (Primate) (CL:4310136) |
| GPin-BF cholinergic-GABAergic neuron (Primate) (CL:4310083) |
| VTR-HTH Glut glutamatergic neuron of the basal ganglia (Primate) (CL:4310144) |
| hair follicle isthmus-associated fibroblast (CL:0020012) |
| prototypic neuron (Primate) (CL:4310094) |
| SN SOX6 Dopa substantia nigra dopaminergic neuron (Primate) (CL:4310115) |
| STRv D1-NUDAP medium spiny neuron (Primate) (CL:4310137) |
| SN-VTR CALB1 Dopa substantia nigra dopaminergic neuron (Primate) (CL:4310109) |
| SN SEMA5A GABA GABAergic interneuron (Primate) (CL:4310114) |
| striatal SST-ADARB2 GABAergic interneuron (Primate) (CL:4310122) |
| SN-VTR GAD2 Dopa dopaminergic neuron (Primate) (CL:4310111) |
| SN EBF2 GABA GABAergic interneuron (Primate) (CL:4310110) |
| STRd D1/D2-hybrid medium spiny neuron (Primate) (CL:4310131) |
| striatal SST-CHODL GABAergic interneuron (Primate) (CL:4310123) |
| STR TAC3-PLPP4 GABA TAC3-positive striatal interneuron (Primate) (CL:4310125) |
| STR cholinergic-GABAergic neuron (Primate) (CL:4310135) |
| GPi Shell neuron (Primate) (CL:4310096) |
| Islands of Calleja granule cell (Primate) (CL:4310104) |
| hair follicle associated fibroblast (CL:0020011) |
| BF SKOR1 Glut glutamatergic neuron of the basal ganglia (Primate) (CL:4310088) |
| STRd D1 Matrix medium spiny neuron (Primate) (CL:4310129) |
| striosomal D1 medium spiny neuron (Primate) (CL:4310130) |
| STR-BF TAC3-PLPP4-LHX8 GABA TAC3-positive striatal interneuron (Primate) (CL:4310126) |
| STRd cholinergic-GABAergic neuron (Primate) (CL:4310128) |
| OB Dopa-GABA neuron (Primate) (CL:4310147) |
| GPe-NDB-SI LHX6-LHX8-GBX1 GABA GABAergic interneuron (Primate) (CL:4310100) |
| striatal SST-RSPO2 GABAergic interneuron (Primate) (CL:4310124) |
| AMY-SLEA-BNST D1 GABA GABAergic interneuron (Primate) (CL:4310145) |
| striatal VIP GABAergic interneuron (Primate) (CL:4310127) |
| OB FRMD7 GABA GABAergic neuron (Primate) (CL:4310148) |
| hair follicle dermal stem cell (CL:4072103) |
| STRd D2 Matrix medium spiny neuron (Primate) (CL:4310132) |
| STRd D2 Striomat hybrid medium spiny neuron (Primate) (CL:4310133) |
| AMY-SLEA-BNST GABA GABAergic interneuron (Primate) (CL:4310146) |
| striatal LAMP5 LHX6 GABAergic interneuron (Primate) (CL:4310085) |
| arkypallidal neuron (Primate) (CL:4310093) |
| ZI-HTH GABA GABAergic interneuron (Primate) (CL:4310143) |
| STH PVALB-PITX2 Glut glutamatergic neuron of the basal ganglia (Primate) (CL:4310118) |
| dermal sheath fibroblast (CL:0020013) |
| striatal LAMP5 CXCL14 GABAergic interneuron (Primate) (CL:4310084) |
| striosomal D2 medium spiny neuron (Primate) (CL:4310134) |
| SN GATA3-PVALB GABA GABAergic neuron (Primate) (CL:4310113) |
| striatal pthlh-expressing interneuron (Primate) (CL:4310120) |
Relationships added: 73
| Subject | Predicate | Object |
|---|---|---|
| striatal SST-LYPD6-RSPO2 GABAergic interneuron (Primate) (CL:4310121) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) |
| STRd D1 Matrix medium spiny neuron (Primate) (CL:4310129) | subClassOf (rdfs:subClassOf) | matrix D1 medium spiny neuron (CL:4030043) |
| STRd D2 Striomat hybrid medium spiny neuron (Primate) (CL:4310133) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) |
| hair follicle associated fibroblast (CL:0020011) | subClassOf (rdfs:subClassOf) | skin fibroblast (CL:0002620) |
| GPi Core neuron (Primate) (CL:4310095) | subClassOf (rdfs:subClassOf) | internal globus pallidus core projecting neuron (CL:0020003) |
| OB FRMD7 GABA GABAergic neuron (Primate) (CL:4310148) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) |
| STRd cholinergic-GABAergic neuron (Primate) (CL:4310128) | subClassOf (rdfs:subClassOf) | dorso-striatal cholinergic-GABAergic neuron (CL:0020007) |
| GPi Shell neuron (Primate) (CL:4310096) | RO:0002162 | NCBITaxon:9443 |
| SN GATA3-PAX8 GABA GABAergic interneuron (Primate) (CL:4310112) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) |
| GPi Shell neuron (Primate) (CL:4310096) | subClassOf (rdfs:subClassOf) | internal globus pallidus shell projection neuron (CL:0020004) |
| ZI-HTH GABA GABAergic interneuron (Primate) (CL:4310143) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) |
| STR cholinergic-GABAergic neuron (Primate) (CL:4310135) | subClassOf (rdfs:subClassOf) | striatal cholinergic-GABAergic neuron (CL:0020008) |
| SN SEMA5A GABA GABAergic interneuron (Primate) (CL:4310114) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) |
| dermal sheath fibroblast (CL:0020013) | subClassOf (rdfs:subClassOf) | hair follicle associated fibroblast (CL:0020011) |
| hair follicle dermal papilla cell (CL:0000346) | RO:0002215 | GO:0060638 |
| fibroblast of the reticular layer of dermis (CL:2000096) | subClassOf (rdfs:subClassOf) | secretory cell (CL:0000151) |
| VTR-HTH Glut glutamatergic neuron of the basal ganglia (Primate) (CL:4310144) | subClassOf (rdfs:subClassOf) | glutamatergic neuron of the basal ganglia (CL:4042040) |
| SN-VTR GAD2 Dopa dopaminergic neuron (Primate) (CL:4310111) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) |
| SN SOX6 Dopa substantia nigra dopaminergic neuron (Primate) (CL:4310115) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) |
| arkypallidal neuron (Primate) (CL:4310093) | subClassOf (rdfs:subClassOf) | arkypallidal neuron (CL:0020010) |
| SN-VTR CALB1 Dopa substantia nigra dopaminergic neuron (Primate) (CL:4310109) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) |
| STR TAC3-PLPP4 GABA TAC3-positive striatal interneuron (Primate) (CL:4310125) | subClassOf (rdfs:subClassOf) | TAC3-positive striatal interneuron (CL:4042001) |
| STR-BF TAC3-PLPP4-LHX8 GABA TAC3-positive striatal interneuron (Primate) (CL:4310126) | subClassOf (rdfs:subClassOf) | TAC3-positive striatal interneuron (CL:4042001) |
| hair follicle associated fibroblast (CL:0020011) | subClassOf (rdfs:subClassOf) | hair follicle cell (CL:0002559) |
| SN EBF2 GABA GABAergic interneuron (Primate) (CL:4310110) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) |
| STRv D1-NUDAP medium spiny neuron (Primate) (CL:4310137) | subClassOf (rdfs:subClassOf) | D1-NUDAP medium spiny neuron (CL:4030054) |
| intrinsically photosensitive retinal ganglion cell (CL:0020014) | subClassOf (rdfs:subClassOf) | retinal ganglion cell (CL:0000740) |
| GPin-BF cholinergic-GABAergic neuron (Primate) (CL:4310083) | subClassOf (rdfs:subClassOf) | GABA-Chol neuron (CL:0008061) |
| intrinsically photosensitive retinal ganglion cell (CL:0020014) | subClassOf (rdfs:subClassOf) | photoreceptor cell (CL:0000210) |
| dermal sheath fibroblast (CL:0020013) | RO:0002292 | PR:P16444 |
| OB Dopa-GABA neuron (Primate) (CL:4310147) | subClassOf (rdfs:subClassOf) | OB-Dopa-GABA (CL:0020006) |
| striatal SST-RSPO2 GABAergic interneuron (Primate) (CL:4310124) | subClassOf (rdfs:subClassOf) | sst GABAergic interneuron (CL:4023017) |
| AMY-SLEA-BNST GABA GABAergic interneuron (Primate) (CL:4310146) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) |
| prototypic neuron (Primate) (CL:4310094) | subClassOf (rdfs:subClassOf) | prototypic neuron (CL:0020009) |
| fibroblast of the reticular layer of dermis (CL:2000096) | RO:0002292 | PR:Q15063 |
| striosomal D2 medium spiny neuron (Primate) (CL:4310134) | subClassOf (rdfs:subClassOf) | striosomal D2 medium spiny neuron (CL:4030049) |
| pvalb chandelier GABAergic interneuron (CL:4023036) | RO:0015004 | CLM:1000063 |
| fibroblast of the reticular layer of dermis (CL:2000096) | RO:0003000 | GO:0005584 |
| dermal sheath fibroblast (CL:0020013) | RO:0002215 | GO:0006936 |
| striatal SST-CHODL GABAergic interneuron (Primate) (CL:4310123) | subClassOf (rdfs:subClassOf) | sst chodl GABAergic interneuron (CL:4023121) |
| striatal LAMP5 CXCL14 GABAergic interneuron (Primate) (CL:4310084) | subClassOf (rdfs:subClassOf) | lamp5 GABAergic interneuron (CL:4023011) |
| STRv D2 medium spiny neuron (Primate) (CL:4310138) | subClassOf (rdfs:subClassOf) | ... |
Contributors
dosumis, hkir-dev, and Caroline-99
Assets 59
2025-11-04 Release
Release Notes 2025-11-04
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 3164 |
| Number of annotations on CL terms | 16360 |
| Number of synonyms | 6816 |
| Number of unique references | 1960 |
| Number of unique references in definitions | 1945 |
| Number of relationships with CL term as subject | 4696 |
| Number of cellxgene classes | 955 |
| Number of HRA classes | 516 |
Text definitions changed: 9
| Term | Old Text Definition | New Text Definition |
|---|---|---|
| Lugaro cell (Mmus) (CL:4301575) | A Purkinje layer interneuron of the Mus musculus brain. It is distinguished from other cells in the brain by selective expression of Pthlh (Mmus), Tfap2b (Mmus), Rspo2 (Mmus). Reference transcriptomic data for this type can be found in the dataset/taxonomy - Yao et al. (2023), Whole Mouse Brain in cell set Supertype:1145 CB PLI Gly-Gaba_2. | A Lugaro cell of the Mus musculus brain. It is distinguished from other cells in the brain by selective expression of Pthlh (Mmus), Tfap2b (Mmus), Rspo2 (Mmus). Reference transcriptomic data for this type can be found in the dataset/taxonomy - Yao et al. (2023), Whole Mouse Brain in cell set Supertype:1145 CB PLI Gly-Gaba_2. |
| pvalb GABAergic interneuron (CL:4023018) | A transcriptomically distinct GABAergic interneuron with a soma located in a cerebral cortex and it expresses Parvalbumin. | A transcriptomically distinct GABAergic interneuron with a soma located in the pallium. These neurons express Parvalbumin. |
| otic fibrocyte (CL:0002665) | A mesenchymal cell of the cochlea that has specialized structural and molecular adaptions. | A mesenchymal cell within the inner ear, specifically localised to supportive connective tissues such as the spiral ligament and spiral limbus. This cell has specialised structural and molecular adaptations, and it contributes to the homeostasis of the cochlear environment by participating in ionic regulation crucial for auditory function. |
| D1-NUDAP medium spiny neuron (CL:4030054) | A DRD1-expressing medium spiny neuron that is part of dense, RXFP1-positive cell islands throughout the nucleus accumbens, putamen, and near the adjacent septal nuclei. | A DRD1-expressing medium spiny neuron that is part of dense, RXFP1-positive cell islands throughout the nucleus accumbens, putamen, and near the adjacent septal nuclei. |
| fibrocyte of adventitia of ureter (CL:1000308) | A fibrocyte that is part of the adventitia of ureter. | A stromal cell that is part of the outer adventitial layer of the ureter. This cell type is marked by expression of periostin (POSTN) in mice, and it is derived from Foxd1+ mesenchymal progenitors around embryonic day 12.5. The adventitial fibrocyte initiates differentiation earlier than smooth muscle cells and becomes terminally differentiated by E16.5-18.5 in mice, exhibiting low proliferative capacity in adulthood. |
| pvalb chandelier GABAergic interneuron (Homo sapiens) (CL:4072046) | A transcriptomically definined chandelierl pvalb GABAergic interneuron in humans. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Chandelier. | A transcriptomically definined GABAergic interneuron of the human pallium. These cells correspond to the classically defined pvalb chandelier neuron type. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Chandelier. |
| cerebellar inhibitory GABAergic interneuron (CL:4023057) | Any GABAergic interneuron that has its soma located in some cerebellar cortex. | A GABAergic interneuron whose soma is located in the cerebellar cortex. |
| internal globus pallidus core projecting neuron (CL:0020003) | A projection neuron that has its soma located in the internal segment of the globus pallidus (GPi) of primates, in the central “core” region. It expresses parvalbumin, is primarily GABAergic, and projects to motor thalamic nuclei including the ventral anterior, ventrolateral, and ventromedial nuclei. This neuron corresponds to the sensorimotor output population of the GPi, as demonstrated in human tissue and cross-species comparative studies (Wallace et al., 2017) and by classic tracing in primates (Parent & De Bellefeuille, 1982; Parent et al., 2001). | A projection neuron that has its soma located in the internal segment of the globus pallidus (GPi) of primates, in the central “core” region. It expresses parvalbumin, is primarily GABAergic, and projects to motor thalamic nuclei including the ventral anterior, ventrolateral, and ventromedial nuclei. In the rodent homolog (entopeduncular nucleus), the core subregion is characterized by concentrated parvalbumin-positive neurons targeting the ventral anterior-ventral lateral thalamic nucleus and receives inputs from the dorsolateral striatum innervated by sensorimotor cortices (Miyamoto & Fukuda, 2022). This neuron corresponds to the sensorimotor output population of the GPi, as demonstrated in human tissue and cross-species comparative studies (Wallace et al., 2017) and by classic tracing in primates (Parent & De Bellefeuille, 1982; Parent et al., 2001). |
| pvalb chandelier GABAergic interneuron (CL:4023036) | A transcriptomically distinct pvalb GABAergic interneuron that is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner. | A transcriptomically distinct pvalb GABAergic interneuron located in the pallium. It is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner. These cells are fast-spiking. |
Classes added: 6
| Term |
|---|
| dorso-striatal cholinergic-GABAergic neuron (CL:0020007) |
| prototypic neuron (CL:0020009) |
| OB-Dopa-GABA (CL:0020006) |
| spiral ligament fibrocyte (CL:0020005) |
| striatal cholinergic-GABAergic neuron (CL:0020008) |
| arkypallidal neuron (CL:0020010) |
Relationships added: 40
| Subject | Predicate | Object |
|---|---|---|
| mesangial cell (CL:0000650) | subClassOf (rdfs:subClassOf) | kidney cortical cell (CL:0002681) |
| arkypallidal neuron (CL:0020010) | subClassOf (rdfs:subClassOf) | GABAergic neuron (CL:0000617) |
| kidney interstitial fibrocyte (CL:1000693) | subClassOf (rdfs:subClassOf) | stromal cell (CL:0000499) |
| dorso-striatal cholinergic-GABAergic neuron (CL:0020007) | subClassOf (rdfs:subClassOf) | GABA-Chol neuron (CL:0008061) |
| Lugaro cell (Mmus) (CL:4301575) | subClassOf (rdfs:subClassOf) | Lugaro cell (CL:0011006) |
| pvalb GABAergic interneuron (CL:4023018) | subClassOf (rdfs:subClassOf) | neuron of the forebrain (CL:0012001) |
| OB-Dopa-GABA (CL:0020006) | subClassOf (rdfs:subClassOf) | dopaminergic neuron (CL:0000700) |
| dorso-striatal cholinergic-GABAergic neuron (CL:0020007) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) |
| mesangial cell (CL:0000650) | BFO:0000050 | UBERON:0002319 |
| arkypallidal neuron (CL:0020010) | subClassOf (rdfs:subClassOf) | neuron of the forebrain (CL:0012001) |
| spiral ligament fibrocyte (CL:0020005) | subClassOf (rdfs:subClassOf) | otic fibrocyte (CL:0002665) |
| otic fibrocyte (CL:0002665) | BFO:0000050 | UBERON:0001846 |
| arkypallidal neuron (CL:0020010) | RO:0002100 | UBERON:0002476 |
| pvalb GABAergic interneuron (CL:4023018) | subClassOf (rdfs:subClassOf) | medial ganglionic eminence derived interneuron (CL:4023063) |
| fibrocyte of adventitia of ureter (CL:1000308) | subClassOf (rdfs:subClassOf) | stromal cell (CL:0000499) |
| dorso-striatal cholinergic-GABAergic neuron (CL:0020007) | subClassOf (rdfs:subClassOf) | striatum neuron (CL:0002613) |
| pvalb chandelier GABAergic interneuron (CL:4023036) | RO:0002292 | PR:000013502 |
| striatal cholinergic-GABAergic neuron (CL:0020008) | subClassOf (rdfs:subClassOf) | GABA-Chol neuron (CL:0008061) |
| prototypic neuron (CL:0020009) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| prototypic neuron (CL:0020009) | RO:0002292 | PR:000011241 |
| fibrocyte of adventitia of ureter (CL:1000308) | RO:0002292 | PR:000013031 |
| prototypic neuron (CL:0020009) | RO:0002202 | UBERON:0004024 |
| kidney interstitial fibrocyte (CL:1000693) | RO:0002202 | circulating fibrocyte (CL:0000135) |
| OB-Dopa-GABA (CL:0020006) | subClassOf (rdfs:subClassOf) | ... |
Contributors
dosumis, gouttegd, and 2 other contributors
Assets 59
2025-10-16 Release
Release Notes 2025-10-16
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 3159 |
| Number of annotations on CL terms | 16333 |
| Number of synonyms | 6805 |
| Number of unique references | 1960 |
| Number of unique references in definitions | 1923 |
| Number of relationships with CL term as subject | 4668 |
| Number of cellxgene classes | 955 |
| Number of HRA classes | 516 |
Nodes renamed: 19
| ID | Old Label | New Label |
|---|---|---|
| CL:4023016 | VIP GABAergic cortical interneuron | VIP GABAergic interneuron |
| CL:4023121 | sst chodl GABAergic cortical interneuron | sst chodl GABAergic interneuron |
| CL:4047054 | migratory dendtritic cell | migratory dendritic cell |
| CL:0000135 | fibrocyte | circulating fibrocyte |
| CL:4023011 | lamp5 GABAergic cortical interneuron | lamp5 GABAergic interneuron |
| CL:4023017 | sst GABAergic cortical interneuron | sst GABAergic interneuron |
| CL:4042032 | PAX6 GABAergic cortical interneuron | PAX6 GABAergic interneuron |
| CL:4023069 | medial ganglionic eminence derived GABAergic cortical interneuron | medial ganglionic eminence derived GABAergic interneuron |
| CL:0000940 | mucosal invariant T cell | mucosal-associated invariant T cell |
| CL:4023064 | caudal ganglionic eminence derived cortical interneuron | caudal ganglionic eminence derived interneuron |
| CL:4023036 | chandelier pvalb GABAergic cortical interneuron | chandelier pvalb GABAergic interneuron |
| CL:4023015 | sncg GABAergic cortical interneuron | sncg GABAergic interneuron |
| CL:4023018 | pvalb GABAergic cortical interneuron | pvalb GABAergic interneuron |
| CL:4307026 | Bergman glial cell (Mmus) | Bergmann glial cell (Mmus) |
| CL:0002040 | immature NK T cell stage II | immature NK T cell stage II, mouse |
| CL:0000293 | structural cell | obsolete structural cell |
| CL:0002039 | immature NK T cell stage I | immature NK T cell stage I, mouse |
| CL:0002041 | immature NK T cell stage III | immature NK T cell stage III, mouse |
| CL:0002042 | immature NK T cell stage IV | immature NK T cell stage IV, mouse |
Text definitions changed: 57
| Term | Old Text Definition | New Text Definition |
|---|---|---|
| acinar cell of salivary gland (CL:0002623) | An acinar cell of salivary gland. | An acinar cell that is part of the salivary gland epithelium, responsible for synthesizing and secreting the primary saliva essential for oral digestion, antimicrobial defense, and mucosal immunity. It features apical-basal polarity with apical secretory granules, and tight junctions that maintain polarity and regulate calcium-dependent saliva exocytosis triggered by parasympathetic and sympathetic signals (Ambudkar, 2015). This cell functions in coordination with contractile myoepithelial cells, which aid saliva flow through the ducts into the oral cavity (Khan et al., 2022). In mice and humans, acinar cell development relies on the transcription factor SOX2 (Emmerson et al., 2017), with self-renewal achieved primarily through acinar cell self-duplication and supported by progenitor populations during injury and regeneration (Aure et al., 2016). |
| fraction A pre-pro B cell (CL:0002045) | A pro-B cell that is CD45R/B220-positive, CD43-positive, HSA-low, BP-1-negative and Ly6c-negative. This cell type is also described as being lin-negative, AA4-positive, Kit-positive, IL7Ra-positive and CD45R-positive. | A pro-B cell that is CD45R/B220-positive, CD43-positive, HSA-low, BP-1-negative and Ly6c-negative. This cell type is also described as being lin-negative, AA4-positive, Kit-positive, IL7Ra-positive and CD45R-positive. |
| fraction F mature B cell (CL:0002056) | A mature B cell subset originally defined as having being CD45R-positive, IgM-positive, IgD-positive and CD43-negative. Subsequent research demonstrated being CD21-positive and CD23-negative and CD93 negative. | A mature B cell subset originally defined as having being CD45R-positive, IgM-positive, IgD-positive and CD43-negative. Subsequent research demonstrated being CD21-positive and CD23-negative and CD93 negative. |
| immature NK T cell stage III, mouse (CL:0002041) | A CD24-low, CD44-positive, DX5-low, NK1.1-negative NK T cell. | A CD24-low, CD44-positive, DX5-low, NK1.1-negative NK T cell. |
| mucosal-associated invariant T cell (CL:0000940) | An alpha-beta T cell that is found in the lamina propria of mucosal tissues and is restricted by the MR-1 molecule. | An alpha-beta T cell that is found in the lamina propria of mucosal tissues and is restricted by the MR-1 molecule. This cell develops from double-positive, alpha-beta thymocyte. |
| GABA-Glut neuron (CL:0008060) | A neuron that releases both gamma-aminobutyric acid and glutamate as vesicular neurotransmitters. | A neuron that releases both gamma-aminobutyric acid and glutamate as vesicular neurotransmitters. |
| Lamp5 Lhx6 neuron (CL:4042013) | A transcriptomically distinct lamp5 GABAergic cortical interneuron located in the cerebral cortex that expresses Lamp5 and Lhx6. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', Lamp5 Lhx6. | A transcriptomically distinct GABAergic interneuron marked by Lamp5 and Lhx6 expression, derived from the Medial Ganglionic Eminence (MGE), and located in the pallium. |
| L6 intratelencephalic projecting glutamatergic neuron (CL:4030065) | A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L6 IT. | A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted. |
| pvalb GABAergic interneuron (CL:4023018) | A transcriptomically distinct GABAergic interneuron with a soma located in a cerebral cortex and it expresses Parvalbumin. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: MGE-derived interneurons', Author Categories: 'CrossArea_subclass', cluster Pvalb. | A transcriptomically distinct GABAergic interneuron with a soma located in a cerebral cortex and it expresses Parvalbumin. |
| Bm3 B cell (CL:0000965) | A germinal center B cell that is rapidly dividing and has the phenotype IgD-negative, CD38-positive, and CD77-positive. Somatic hypermutation of the immunoglobulin V gene region can occur during proliferation of this cell type. | A germinal center B cell that is rapidly dividing and has the phenotype IgD-negative, CD38-positive, and CD77-positive. Somatic hypermutation of the immunoglobulin V gene region can occur during proliferation of this cell type. |
| L6 intratelencephalic projecting Car3 glutamatergic neuron (CL:4030068) | A transcriptomically distinct intratelencepalic-projecting glutamatergic neuron that expresses Car3 with a soma found in L6 . The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_cluster', L6 IT Car3. | A transcriptomically distinct intratelencepalic-projecting glutamatergic neuron that expresses Car3 with a soma found in L6. |
| keratinized cell of hair follicle (CL:0010000) | A hair follicle matrix region cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the hair bulb to become the hair medulla cortex and hair root sheath. | A differentiating matrix keratinocyte that has initiated terminal differentiation and keratin synthesis. This cell undergoes a characteristic change while migrating upward from the hair follicle bulb, representing a committed progenitor cell destined to form the hair medulla, cortex and hair root sheath. |
| Bm2 B cell (CL:0000962) | A follicular B cell that is IgD-positive and CD23-positive and CD38-positive. This naive cell type is activated in the extrafollicular areas via interaction with dendritic cells and antigen specific T cells. | A follicular B cell that is IgD-positive and CD23-positive and CD38-positive. This naive cell type is activated in the extrafollicular areas via interaction with dendritic cells and antigen specific T cells. |
| fraction C precursor B cell (CL:0002049) | A precursor B cell that is CD45R-positive, CD43-positive, CD24-positive, and BP-positive. Intracellularly expression of surrogate light chain, Rag1 and Rag2, TdT, occurs while there is no expression of mu heavy chain. | A precursor B cell that is... |
Contributors
matentzn, ubyndr, and 5 other contributors
Assets 52
2025-07-30 Release
Release Notes 2025-07-30
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 3119 |
| Number of annotations on CL terms | 15837 |
| Number of synonyms | 6707 |
| Number of unique references | 1960 |
| Number of unique references in definitions | 1833 |
| Number of relationships with CL term as subject | 4510 |
| Number of cellxgene classes | 942 |
| Number of HRA classes | 488 |
Classes added: 209
| Term |
|---|
| Astro-OLF NN_1 Greb1 astrocyte (Mmus) (CL:4307051) |
| Astro-TE NN_4 astrocyte (Mmus) (CL:4307048) |
| Astro-OLF NN_3 astrocyte (Mmus) (CL:4301598) |
| CHOR NN_1 Tbc1d1 choroid plexus epithelial cell (Mmus) (CL:4307084) |
| ABC NN_1 Dapl1 arachnoid barrier cell (Mmus) (CL:4307114) |
| mature myelinating oligodendrocyte (Mmus) (CL:4301614) |
| COP NN_1 9130019P16Rik committed oligodendrocyte precursor (Mmus) (CL:4307093) |
| DCO Il22 Gly-Gaba_3 cerebellar neuron (Mmus) (CL:4301573) |
| MOL NN_4 Plin3 mature myelinating oligodendrocyte (Mmus) (CL:4307104) |
| Astro-NT NN_1 Six3os1 astrocyte (Mmus) (CL:4307031) |
| choroid plexus epithelial cell (Mmus) (CL:4301608) |
| ependymal cell (Mmus) (CL:4300363) |
| superior mesenteric ganglion SP neuron (CL:4033134) |
| CBX Purkinje Gaba_2 Purkinje cell (Mmus) (CL:4301583) |
| CB PLI Gly-Gaba_3 Purkinje layer interneuron (Mmus) (CL:4301576) |
| celiac ganglion PHI neuron (CL:4033129) |
| Astro-NT NN_1 Slc36a2 astrocyte (Mmus) (CL:4307029) |
| thoracic ganglion enkephalin neuron (CL:4033118) |
| jugular ganglion CGRP neuron (CL:4033155) |
| celiac ganglion SOM neuron (CL:4033132) |
| cerebellar Golgi cell (Mmus) (CL:4301578) |
| Astro-NT NN_2 Sez6l astrocyte (Mmus) (CL:4307035) |
| hypothalamic gonadotropin-releasing hormone neuron (Mmus) (CL:4304384) |
| middle cervical ganglion NPY neuron (CL:4033111) |
| CB Granule Glut_1 cerebellar granule cell (Mmus) (CL:4301584) |
| OPC NN_1 Neil3 oligodendrocyte precursor cell (Mmus) (CL:4307086) |
| celiac ganglion CGRP neuron (CL:4033130) |
| Astro-TE NN_2 Clstn2 astrocyte (Mmus) (CL:4307042) |
| Astro-NT NN_2 Fam227b astrocyte (Mmus) (CL:4307036) |
| cervicothoracic ganglion enkephalin neuron (CL:4033113) |
| COP NN_1 Vwc2 committed oligodendrocyte precursor (Mmus) (CL:4307096) |
| Astro-OLF NN_2 astrocyte (Mmus) (CL:4301597) |
| submandibular ganglion TH cholinergic neuron (CL:4033141) |
| BAM NN_1 Mrc1 border associated macrophage (Mmus) (CL:4307133) |
| cerebellar glutamatergic neuron (Mmus) (CL:4300029) |
| Astro-TE NN_2 Mcm6 astrocyte (Mmus) (CL:4307043) |
| microglial cell (Mmus) (CL:4307132) |
| Astro-TE NN_1 Lncpint astrocyte (Mmus) (CL:4307040) |
| Astro-OLF NN_2 Slc25a34 astrocyte (Mmus) (CL:4307053) |
| jugular ganglion TRPV1 neuron (CL:4033152) |
| OPC-Oligo cell (Mmus) (CL:4300031) |
| superior cervical ganglion TH/NPY neuron (CL:4033104) |
| alpha2-tanycyte (Mmus) (CL:4307067) |
| celiac ganglion VIP neuron (CL:4033128) |
| Tanycyte NN_2 tanycyte (Mmus) (CL:4301603) |
| superior cervical ganglion VIP neuron (CL:4033106) |
| atrial intrinsic cardiac ganglion TH neuron (CL:4033100) |
| OEC NN_1 Adamts12 olfactory ensheathing cell (Mmus) (CL:4307109) |
| pelvic ganglion nNOS neuron (CL:4033170) |
| Tanycyte NN_2 Mroh5 alpha1-tanycyte (Mmus) (CL:4307066) |
| beta1-tancyte (Mmus) (CL:4307069) |
| olfactory ensheathing cell (Mmus) (CL:4301615) |
| commited oligodendrocyte precursor (Mmus) (CL:4301611) |
| Astro-OLF NN_3 Sfrp1 astrocyte (Mmus) (CL:4307056) |
| superior cervical ganglion SST neuron (CL:4033105) |
| COP NN_1 Cck committed oligodendrocyte precursor (Mmus) (CL:4307097) |
| pterygopalatine ganglion VIP neuron (CL:4033145) |
| border associated macrophage (Mmus) (CL:4301625) |
| lumbar ganglion NPY neuron (CL:4033125) |
| ABC NN_1 Cubn arachnoid barrier cell (Mmus) (CL:4307115) |
| cervicothoracic ganglion TH neuron (CL:4033114) |
| ciliary ganglion TH neuron (CL:4033140) |
| jugular ganglion SP neuron (CL:4033154) |
| subcortical astrocyte (Mmus) (CL:4300358) |
| pterygopalatine ganglion nNOS neuron (CL:4033146) |
| cervicothoracic ganglion TH/NPY neuron (CL:4033115) |
| Astro-TE NN_5 Hs3st3a1 astrocyte (Mmus) (CL:4307049) |
| oligodendrocyte (Mmus) (CL:4300367) |
| STR D2 Gaba indirect pathway medium spiny neuron (Mmus) (CL:4300102) |
| OEC NN_1 Gdpd4 olfactory ensheathing cell (Mmus) (CL:4307110) |
| sacral ganglion TH neuron (CL:4033126) |
| geniculate ganglion SPARCL1 neuron (CL:4033158) |
| OPC NN_1 Col27a1 oligodendrocyte precursor cell (Mmus) (CL:4307089) |
| myenteric ganglion of small intestine nNOS/ChAT neuron (CL:4033164) |
| cerebellar granule cell (Mmus) (CL:4300354) |
| pinealocyte (Mmus) (CL:4306426) |
| Astro-TE NN_3 astrocyte (Mmus) (CL:4301593) |
| pelvic ganglion nNOS/VAChT neuron (CL:4033173) |
| Tanycyte NN_2 Mylk3 alpha1-tanycyte (Mmus) (CL:4307065) |
| DCO Il22 Gly-Gaba cerebellar neuron (Mmus) (CL:4300348) |
| Astro-TE NN_5 astrocyte (Mmus) (CL:4301595) |
| olfactory areas astrocyte (Mmus) (CL:4300360) |
| nodose ganglion P2X3 neuron (CL:4033149) |
| Astro-NT NN_2 Fzd2 astrocyte (Mmus) (CL:4307034) |
| middle cervical ganglion VIP neuron (CL:4033112) |
| lumbar ganglion TH/NPY neuron (CL:4033123) |
| myenteric ganglion of small intestine VIP/GAL neuron (CL:4033166) |
| cerebellar GABAergic neuron (Mmus) (CL:4300028) |
| unipolar brush cell (Mmus) (CL:4301586) |
| pelvic ganglion nNOS/VIP neuron (CL:4033171) |
| Astro-NT NN_1 Kcnk10 astrocyte (Mmus) (CL:4307032) |
| ABC NN_1 Pde11a arachnoid barrier cell (Mmus) (CL:4307113) |
| geniculate ganglion VGLUT2 neuron (CL:4033159) |
| Bergman glial cell (Mmus) (CL:4307026) |
| middle cervical ganglion TH/NPY neuron (CL:4033110) |
| myenteric ganglion of small intestine ChAT neuron (CL:4033160) |
| oligodendrocyte precursor cell (Mmus) (CL:4300366) |
| MOL NN_4 Sspo mature myelinating oligodendrocyte (Mmus) (CL:4307108) |
| Purkinje layer interneuron (Mmus) (CL:4300349) |
| OPC NN_1 Mms22l oligodendrocyte precursor cell (Mmus) (CL:4307088) |
| onychofibroblast (CL:4052062) |
| CB Granule Glut_2 cerebellar granule cell (Mmus) (CL:4301585) |
| Astro-OLF NN_1 astrocyte (Mmus) (CL:4301596) |
| Astro-TE NN_1 astrocyte (Mmus) (CL:4301591) |
| ciliary ganglion VIP/PHI neuron (CL:4033139) |
| otic ganglion VIP neuron (CL:4033138) |
| nodose ganglion TRPV1 neuron (CL:4033148) |
| Tanycyte NN_1 tanycyte (Mmus) (CL:4301602) |
| thoracic ganglion TH/NPY neuron (CL:4033120) |
| CB PLI GABA Ly6d Purkinje layer interneuron (CL:4307005) |
| MOL NN_4 Art3 mature myelinating oligodendrocyte (Mmus) (CL:4307106) |
| lumbar ganglion VIP neuron (CL:4033121) |
| MFOL NN_3 Cxcl12 myelin-forming oligodendrocyte (Mmus) (CL:4307102) |
| OPC NN_1 Irx2 oligodendrocyte precursor cell (Mmus) (CL:4307087) |
| myenteric ganglion of small intestine nNOS neuron (CL:4033161) |
| arachnoid barrier cell (Mmus) (CL:4301616) |
| otic ganglion nNOS neuron (CL:4033137) |
| inferior mesenteric ganglion TH neuron (CL:4033135) |
| inferior mesenteric ganglion SP neuron (CL:4033136) |
| OEC NN_1 A330076C08Rik olfactory ensheathing cell (Mmus) (CL:4307111) |
| pelvic ganglion TH/DBH neuron (CL:4033168) |
| pelvic ganglion NPY/VAChT neuron (CL:4033172) |
| lumbar ganglion TH neuron (CL:4033124) |
| MOL NN_4 Spock3 mature myelinating oligodendrocyte (Mmus) (CL:4307105) |
| Astro-NT NN_1 Nuf2 astrocyte (Mmus) (CL:4307030) |
| Purkinje cell (Mmus) (CL:4300353) |
| CBX MLI Megf11 Gaba molecular layer interneuron (Mmus) (CL:4300351) |
| DCO Il22 Gly-Gaba_1 cerebellar neuron (Mmus) (CL:4301571) |
| Astro-OLF NN_1 Stk32a astrocyte (Mmus) (CL:4307052) |
| celiac ganglion SP neuron (CL:4033131) |
| geniculate ganglion TRPV1 neuron (CL:4033157) |
| nodose ganglion TRPV2 neuron (CL:4033150) |
| superior cervical ganglion CGRP neuron (CL:4033107) |
| pterygopalatine ganglion VIP/PHI neuron (CL:4033144) |
| celiac ganglion SOM/CGRP neuron (CL:4033133) |
| jugular ganglion TRPV2 neuron (CL:4033153) |
| pelvic ganglion TH neuron (CL:4033167) |
| Astro-TE NN_1 Rasl10b astrocyte (Mmus) (CL:4307039) |
| Astro-TE NN_2 astrocyte (Mmus) (CL:4301592) |
| tanycyte (Mmus) (CL:4300362) |
| myenteric ganglion of small intestine VIP neuron (CL:4033162) |
| NFOL NN_2 Dbx2 newly formed oligodendrocyte (Mmus) (CL:4307099) |
| CBX MLI Cdh22 Gaba molecular layer interneuron (Mmus) (CL:4307012) |
| Astro-NT NN_1 Mecom astrocyte (Mmus) (CL:4307033) |
| myenteric ganglion of small intestine nNOS/VIP neuron (CL:4033163) |
| lower airway ganglion ChAT/VIP neuron (CL:4033127) |
| CB PLI Gly-Gaba_1 Purkinje layer interneuron (Mmus) (CL:4301574) |
| NFOL NN_2 Rgs16 newly formed oligodendrocyte (Mmus) (CL:4307100) |
| beta-2 tanycyte (Mmus) (CL:4307070) |
| Tanycyte NN_1 Cnmd tanycyte of subfornical organ (Mmus) (CL:4307063) |
| COP NN_1 Rgcc committed oligodendrocyte precursor (Mmus) (CL:4307092) |
| Astro-NT NN_2 Gm30524 astrocyte (Mmus) (CL:4307037) |
| epidermal keratinocyte (CL:4052061) |
| Astro-OLF NN_2 Alk astrocyte (Mmus) (CL:4307054) |
| OEC NN_1 Rasgef1c olfactory ensheathing cell (Mmus) (CL:4307112) |
| submandibular ganglion nNOS neuron (CL:4033143) |
| ovarian nerve plexus ganglion TH neuron (CL:4033174) |
| CB PLI Gly-Gaba_2 Purkinje layer interneuron (Mmus) (CL:4301575) |
| myenteric ganglion of small intestine ChAT/CALR/SOM/SP neuron (CL:4033165) |
| thoracic ganglion TH neuron (CL:4033119) |
| Astro-NT NN_2 astrocyte (Mmus) (CL:4301590) |
| superior cervical ganglion TH/DBH neuron (CL:4033101) |
| OPC NN_2 oligodendrocyte precursor cell (Mmus) (CL:4307091) |
| Astro-TE NN_1 Jph4 astrocyte (Mmus) (CL:4307041)... |
Contributors
cmungall, gouttegd, and 4 other contributors
Assets 52
2025-06-20 Release
Release Notes 2025-06-20
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2912 |
| Number of annotations on CL terms | 14238 |
| Number of synonyms | 6212 |
| Number of unique references | 1963 |
| Number of unique references in definitions | 1775 |
| Number of relationships with CL term as subject | 4085 |
| Number of cellxgene classes | 942 |
| Number of HRA classes | 487 |
Synonyms added: 30
| Term | New Synonym | Predicate |
|---|---|---|
| oligodendrocyte precursor cell (CL:0002453) | O2-A | oio:hasRelatedSynonym |
| A12 dopaminergic neuron (CL:4072009) | hypothalamic arcuate nucleus dopaminergic neuron | oio:hasExactSynonym |
| tanycyte of vascular organ of lamina terminalis (CL:4072014) | tanycyte-like cell of OVLT | oio:hasExactSynonym |
| tanycyte of vascular organ of lamina terminalis (CL:4072014) | Tanycyte-like cells in CVOs | oio:hasBroadSynonym |
| inner wall Schlemm's canal endothelial cell (CL:4033098) | HSCIW cell | oio:hasRelatedSynonym |
| basal cell of epidermis (CL:0002187) | epidermal basal keratinocyte | oio:hasExactSynonym |
| oligodendrocyte precursor cell (CL:0002453) | NG2 cell | oio:hasRelatedSynonym |
| A8 dopaminergic neuron (CL:4072005) | A8 dopamine neuron | oio:hasExactSynonym |
| A9 dopaminergic neuron (CL:4072006) | A9 nigral dopamine neuron | oio:hasExactSynonym |
| cerebellar basket cell (CL:2000027) | cerebellum basket cell | oio:hasExactSynonym |
| BAG3-positive monocyte (CL:4047060) | BAG3+ monocyte | oio:hasExactSynonym |
| committed oligodendrocyte precursor (CL:4023059) | differentiation-committed oligodendrocyte precursor | oio:hasExactSynonym |
| inner wall Schlemm's canal endothelial cell (CL:4033098) | human Schlemm's canal inner wall cell | oio:hasNarrowSynonym |
| spinous cell of epidermis (CL:0000649) | spinous keratinocytes of epidermis | oio:hasExactSynonym |
| newly formed oligodendrocyte (CL:4072001) | NFOL | oio:hasRelatedSynonym |
| A10 dopaminergic neuron (CL:4072007) | A10 VTA Dopaminergic Neuron | oio:hasExactSynonym |
| oligodendrocyte precursor cell (CL:0002453) | Polydendrocyte | oio:hasRelatedSynonym |
| keratinocyte stem cell (CL:0002337) | KSC | oio:hasRelatedSynonym |
| A9 dopaminergic neuron (CL:4072006) | substantia nigra dopaminergic neuron | oio:hasExactSynonym |
| basal cell of epidermis (CL:0002187) | epidermal basal cell | oio:hasExactSynonym |
| Merkel cell (CL:0000242) | MC | oio:hasRelatedSynonym |
| Schlemm's canal endothelial cell (CL:4033097) | SEC | oio:hasRelatedSynonym |
| mature myelinating oligodendrocyte (CL:4072003) | MOL | oio:hasRelatedSynonym |
| Purkinje layer interneuron (CL:4072102) | PLI | oio:hasRelatedSynonym |
| myelin-forming oligodendrocyte (CL:4072002) | MFOL | oio:hasRelatedSynonym |
| oligodendrocyte precursor cell (CL:0002453) | OPC | oio:hasRelatedSynonym |
| Schlemm's canal endothelial cell (CL:4033097) | SC endothelial cell | oio:hasRelatedSynonym |
| granular cell of epidermis (CL:0002189) | granular keratinocyte | oio:hasExactSynonym |
| tanycyte of vascular organ of lamina terminalis (CL:4072014) | tanycyte-like ependymal cell of OVLT | oio:hasExactSynonym |
| Merkel cell of epidermis (CL:4052058) | epdiermal Merkel cell | oio:hasExactSynonym |
Relationships added: 98
| Subject | Predicate | Object |
|---|---|---|
| candelabrum cell (CL:4042030) | subClassOf (rdfs:subClassOf) | Purkinje layer interneuron (CL:4072102) |
| newly formed oligodendrocyte (CL:4072001) | subClassOf (rdfs:subClassOf) | oligodendrocyte (CL:0000128) |
| Merkel cell of epidermis (CL:4052058) | subClassOf (rdfs:subClassOf) | epidermal cell (CL:0000362) |
| mature myelinating oligodendrocyte (CL:4072003) | subClassOf (rdfs:subClassOf) | UBERON:0004121 |
| cartwheel cell (CL:4023160) | subClassOf (rdfs:subClassOf) | GABA-Gly neuron (CL:0008059) |
| granular cell of epidermis (CL:0002189) | BFO:0000051 | GO:0036457 |
| Merkel cell of epidermis (CL:4052058) | subClassOf (rdfs:subClassOf) | Merkel cell (CL:0000242) |
| GABA-Chol neuron (CL:0008061) | subClassOf (rdfs:subClassOf) | cholinergic neuron (CL:0000108) |
| A16 dopaminergic neuron (CL:4072013) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) |
| pulmonary alveolar type 2 cell (CL:0002063) | BFO:0000051 | GO:0097208 |
| myelin-forming oligodendrocyte (CL:4072002) | subClassOf (rdfs:subClassOf) | UBERON:0004121 |
| oligodendrocyte precursor cell (CL:0002453) | RO:0002203 | committed oligodendrocyte precursor (CL:4023059) |
| GABA-Gly neuron (CL:0008059) | subClassOf (rdfs:subClassOf) | glycinergic neuron (CL:1001509) |
| A9 dopaminergic neuron (CL:4072006) | subClassOf (rdfs:subClassOf) | substantia nigra dopaminergic neuron (CL:4042025) |
| Purkinje layer interneuron (CL:4072102) | subClassOf (rdfs:subClassOf) | cerebellar inhibitory GABAergic interneuron (CL:4023057) |
| A12 dopaminergic neuron (CL:4072009) | subClassOf (rdfs:subClassOf) | neuron of the forebrain (CL:0012001) |
| Cajal-Retzius cell (CL:0000695) | subClassOf (rdfs:subClassOf) | glutamatergic neuron (CL:0000679) |
| starburst amacrine cell (CL:0004232) | subClassOf (rdfs:subClassOf) | GABA-Chol neuron (CL:0008061) |
| cerebellar Golgi cell (CL:0000119) | RO:0002100 | UBERON:0002956 |
| A16 dopaminergic neuron (CL:4072013) | subClassOf (rdfs:subClassOf) | olfactory bulb interneuron (CL:1001434) |
| cerebellar Golgi cell (CL:0000119) | RO:0002360 | UBERON:0002974 |
| Schlemm's canal endothelial cell (CL:4033097) | subClassOf (rdfs:subClassOf) | vein endothelial cell (CL:0002543) |
| A11 dopaminergic neuron (CL:4072008) | RO:0002100 | UBERON:0002770 |
| granular cell of epidermis (CL:0002189) | subClassOf (rdfs:subClassOf) | stratum granulosum cell (CL:0000712) |
| A13 dopaminergic neuron (CL:4072010) | subClassOf (rdfs:subClassOf) | dopaminergic neuron (CL:0000700) |
| epithelial fate stem cell (CL:0000036) | subClassOf (rdfs:subClassOf) | somatic stem cell (CL:0000723) |
| A13 dopaminergic neuron (CL:4072010) | RO:0002100 | UBERON:0036007 |
| spinous cell of epidermis (CL:0000649) | RO:0000053 | PATO:0001365 |
| Bergmann glial cell (CL:0000644) | BFO:0000050 | UBERON:0002979 |
| outer wall Schlemm's canal endothelial cell (CL:4033099) | BFO:0000051 | PR:000001432 |
| mature myelinating oligodendrocyte (CL:4072003) | subClassOf (rdfs:subClassOf) | oligodendrocyte (CL:0000128) |
| alarm substance cell (CL:0007021) | subClassOf (rdfs:subClassOf) | secretory cell (CL:0000151) |
| basal cell of epidermis (CL:0002187) | BFO:0000050 | UBERON:0002025 |
| A13 dopaminergic neuron (CL:4072010) | subClassOf (rdfs:subClassOf) | neuron of the forebrain (CL:0012001) |
| tanycyte of vascular organ of lamina terminalis (CL:4072014) | subClassOf (rdfs:subClassOf) | hypothalamus cell (CL:2000030) |
| A15 dopaminergic neuron (CL:4072012) | RO:0002100 | UBERON:0002622 |
| A11 dopaminergic neuron (CL:4072008) | subClassOf (rdfs:subClassOf) | neuron of the forebrain (CL:0012001) |
| GABA-Chol neuron (CL:0008061) | subClassOf (rdfs:subClassOf) | GABAergic neuron (CL:0000617) |
| interneuron (CL:0000099) | RO:0002215 | GO:0014051 |
| A14 dopaminergic neuron (CL:4072011) | subClassOf (rdfs:subClassOf) | dopaminergic neuron (CL:0000700) |
| Merkel cell of epidermis (CL:4052058) | BFO:0000050 | UBERON:0001003 |
| Merkel cell (CL:0000242) | BFO:0000051 | GO:0031201 |
| cerebellar Golgi cell (CL:0000119) | RO:0002113 | UBERON:0002956 |
| A10 dopaminergic neuron (CL:4072007) | RO:0002100 | UBERON:0002691 |
| VIP-ChAT interneuron (CL:4042015) | subClassOf (rdfs:subClassOf) | GABA-Chol neuron (CL:0008061) |
| oligodendrocyte precursor cell (CL:0002453) | BFO:0000050 | glial cell (CL:0000125) |
| A14 dopaminergic neuron (CL:4072011) | subClassOf (rdfs:subClassOf) | central nervous system neuron (CL:2000029) |
| epithelial fate stem cell (CL:0000036) | RO:0002215 | GO:0030855 |
| A8 dopaminergic neuron (CL:4072005) | RO:0002100 | UBERON:0011172 |
| oligodendrocyte precursor cell (CL:0002453) | subClassOf (rdfs:subClassOf) | precursor cell (CL:0011115) |
| tanycyte of vascular organ of lamina terminalis (CL:4072014) | subClassOf (rdfs:subClassOf) | tanycyte (CL:0002085) |
| A16 dopaminergic neuron (CL:4072013) | subClassOf (rdfs:subClassOf) | dopaminergic neuron (CL:0000700) |
| A12 dopaminergic neuron (CL:4072009) | subClassOf (rdfs:subClassOf) | dopaminergic neuron (CL:0000700) |
| Cajal-Retzius cell (CL:0000695) | subClassOf (rdfs:subClassOf) | neuron of the forebrain (CL:0012001) |
| mature myelinating oligodendrocyte (CL:4072003) | RO:0002215 | GO:0032289 |
| basal cell of epidermis (CL:0002187) | RO:0002215 | GO:0030216 |
| myelin-forming oligodendrocyte (CL:4072002) | subClassOf (rdfs:subClassOf) | oligodendr... |
Contributors
dosumis, cthoyt, and 6 other contributors
Assets 52
v2025-04-10
Release Notes 2025-04-10
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2891 |
| Number of annotations on CL terms | 14306 |
| Number of synonyms | 6168 |
| Number of unique references | 2133 |
| Number of unique references in definitions | 1712 |
| Number of relationships with CL term as subject | 4027 |
| Number of cellxgene classes | 942 |
| Number of HRA classes | 485 |
Nodes added to subset: 149
| Term | Subset |
|---|---|
| lymphatic endothelial cell of medulla ceiling (CL:0009110) | cellxgene_subset |
| mature neutrophil (CL:0000096) | cellxgene_subset |
| corticomedullary thymic epithelial cell (CL:0009070) | cellxgene_subset |
| hematopoietic oligopotent progenitor cell (CL:0002032) | cellxgene_subset |
| tuft cell of small intestine (CL:0009080) | cellxgene_subset |
| spermatid (CL:0000018) | cellxgene_subset |
| cerebellar neuron (CL:1001611) | cellxgene_subset |
| spermatogonium (CL:0000020) | cellxgene_subset |
| articular chondrocyte (CL:1001607) | cellxgene_subset |
| intermediate cell of urothelium (CL:4030055) | cellxgene_subset |
| OFF midget ganglion cell (CL:4033047) | cellxgene_subset |
| extratelencephalic-projecting glutamatergic cortical neuron (CL:4023009) | cellxgene_subset |
| epithelial cell of distal tubule (CL:0002305) | cellxgene_subset |
| effector memory CD4-positive, alpha-beta T cell, terminally differentiated (CL:0001087) | cellxgene_subset |
| adult skeletal muscle myoblast (CL:0008017) | cellxgene_subset |
| antibody secreting cell (CL:0000946) | cellxgene_subset |
| lymphatic endothelial cell of subcapsular sinus floor (CL:0009108) | cellxgene_subset |
| perineurial cell (CL:0002576) | cellxgene_subset |
| neural crest derived neuron (CL:0000029) | cellxgene_subset |
| basal cell of urothelium (CL:1000486) | cellxgene_subset |
| fibroblast of dermis (CL:0002551) | cellxgene_subset |
| mature CD8 single-positive thymocyte (CL:0002437) | cellxgene_subset |
| thymic macrophage (CL:0000866) | cellxgene_subset |
| enterocyte of epithelium proper of jejunum (CL:1000341) | cellxgene_subset |
| type II muscle cell (CL:0002212) | cellxgene_subset |
| hippocampal interneuron (CL:1001569) | cellxgene_subset |
| type IIb muscle cell (CL:0002215) | cellxgene_subset |
| fibroblast of the aortic adventitia (CL:0002547) | cellxgene_subset |
| peritubular myoid cell (CL:0002481) | cellxgene_subset |
| medullary thymic epithelial cell type 1 (CL:0009071) | cellxgene_subset |
| hair follicle melanocyte (CL:0002483) | cellxgene_subset |
| striated cell of salivary gland (CL:4052049) | human_reference_atlas |
| basal cell of epithelium of bronchus (CL:1000349) | cellxgene_subset |
| enterocyte of epithelium proper of duodenum (CL:1000340) | cellxgene_subset |
| colon endothelial cell (CL:1001572) | cellxgene_subset |
| neurectodermal cell (CL:0000133) | cellxgene_subset |
| mucous cell of stomach (CL:0002180) | cellxgene_subset |
| polychromatophilic erythroblast (CL:0000550) | cellxgene_subset |
| group 1 innate lymphoid cell (CL:0001067) | cellxgene_subset |
| acinar cell of salivary gland (CL:0002623) | human_reference_atlas |
| ON parasol ganglion cell (CL:4033052) | cellxgene_subset |
| epithelial cell of stomach (CL:0002178) | cellxgene_subset |
| medial ganglionic eminence derived GABAergic cortical interneuron (CL:4023069) | cellxgene_subset |
| CD14-positive, CD16-low monocyte (CL:0001055) | cellxgene_subset |
| medullary thymic epithelial cell type 2 (CL:0009072) | cellxgene_subset |
| neuron of the forebrain (CL:0012001) | cellxgene_subset |
| CD103-positive dendritic cell (CL:0002461) | cellxgene_subset |
| respiratory tract multiciliated cell (CL:4030034) | cellxgene_subset |
| kidney inner medulla collecting duct epithelial cell (CL:1000547) | cellxgene_subset |
| phagocyte (CL:0000234) | cellxgene_subset |
| central nervous system neuron (CL:2000029) | cellxgene_subset |
| peg cell (CL:4033014) | cellxgene_subset |
| enteroglial cell (CL:4040002) | cellxgene_subset |
| airway submucosal gland collecting duct epithelial cell (CL:4033023) | cellxgene_subset |
| neuro-medullary thymic epithelial cell (CL:0009076) | cellxgene_subset |
| IgM plasmablast (CL:0000983) | cellxgene_subset |
| bronchiolar smooth muscle cell (CL:4033017) | cellxgene_subset |
| endothelial cell of arteriole (CL:1000412) | cellxgene_subset |
| CD4-negative, CD8-negative, alpha-beta intraepithelial T cell (CL:0000935) | cellxgene_subset |
| premigratory neural crest cell (CL:0007004) | cellxgene_subset |
| hippocampal pyramidal neuron (CL:1001571) | cellxgene_subset |
| peridermal cell (CL:0000078) | cellxgene_subset |
| myoepithelial cell of bronchus submucosal gland (CL:4033003) | cellxgene_subset |
| extrafusal muscle fiber (CL:0008046) | cellxgene_subset |
| odontoblast (CL:0000060) | cellxgene_subset |
| gastrointestinal tract (lamina propria) macrophage of large intestine (CL:0009008) | cellxgene_subset |
| type I muscle cell (CL:0002211) | cellxgene_subset |
| cardiac blood vessel endothelial cell (CL:0010006) | cellxgene_subset |
| myo-medullary thymic epithelial cell (CL:0009075) | cellxgene_subset |
| cerebral cortex pyramidal neuron (CL:4023111) | cellxgene_subset |
| mature CD4 single-positive thymocyte (CL:0002436) | cellxgene_subset |
| alveolar capillary type 2 endothelial cell (CL:4028003) | cellxgene_subset |
| kidney arterial blood vessel cell (CL:1000891) | cellxgene_subset |
| mesonephric nephron tubule epithelial cell (CL:1000022) | cellxgene_subset |
| secondary crest myofibroblast (CL:4033016) | cellxgene_subset |
| mucus secreting cell of bronchus submucosal gland (CL:4033022) | cellxgene_subset |
| fallopian tube multiciliated epithelial cell (CL:4030007) | cellxgene_subset |
| CD8-positive, alpha-beta regulatory T cell (CL:0000795) | cellxgene_subset |
| kidney loop of Henle descending limb epithelial cell (CL:1001021) | cellxgene_subset |
| ON midget ganglion cell (CL:4033046) | cellxgene_subset |
| umbrella cell of urothelium (CL:4030056) | cellxgene_subset |
| lung megakaryocyte (CL:4033018) | cellxgene_subset |
| oral mucosa squamous cell (CL:1001576) | cellxgene_subset |
| enterochromaffin-like cell (CL:0000504) | cellxgene_subset |
| exocrine cell (CL:0000152) | cellxgene_subset |
| CD8-positive, CD28-negative, alpha-beta regulatory T cell (CL:0000920) | cellxgene_subset |
| B cell zone reticular cell (CL:0009104) | cellxgene_subset |
| glomerular mesangial cell (CL:1000742) | cellxgene_subset |
| CD22-positive, CD38-low small pre-B cell (CL:0002053) | cellxgene_subset |
| extracellular matrix secreting cell (CL:0000327) | cellxgene_subset |
| chondroblast (CL:0000058) | cellxgene_subset |
| adipocyte of omentum tissue (CL:0002615) | cellxgene_subset |
| pulmonary capillary endothelial cell (CL:4028001) | cellxgene_subset |
| thymic fibroblast type 1 (CL:0009078) | cellxgene_subset |
| stromal cell of bone marrow (CL:0010001) | cellxgene_subset |
| orthochromatic erythroblast (CL:0000552) | cellxgene_subset |
| vestibular dark cell (CL:0000846) | cellxgene_subset |
| cell in vitro (CL:0001034) | cellxgene_subset |
| double-positive blast (CL:0002428) | cellxgene_subset |
| hypertrophic chondrocyte (CL:0000743) | cellxgene_subset |
| keratinizing barrier epithelial cell (CL:0000237) | cellxgene_subset |
| perivascular macrophage (CL:0000881) | cellxgene_subset |
| supporting cell of vestibular epithelium (CL:0002316) | cellxgene_subset |
| stratified squamous epithelial cell (CL:0000240) | cellxgene_subset |
| spermatocyte (CL:0000017) | cellxgene_subset |
| L4/5 intratelencephalic projecting glutamatergic neuron (CL:4030062) | cellxgene_subset |
| enterocyte of epithelium proper of small intestine (CL:1000339) | cellxgene_subset |
| fallopian tube secretory epithelial cell (CL:4030006) | cellxgene_subset |
| basophilic erythroblast (CL:0000549) | cellxgene_subset |
| muscle fibroblast (CL:1001609) | cellxgene_subset |
| onychocyte (CL:4033056) | cellxgene_subset |
| gingival epithelial cell (CL:0002621) | human_reference_atlas |
| OFF parasol ganglion cell (CL:4033051) | cellxgene_subset |
| skeletal muscle myoblast (CL:0000515) | cellxgene_subset |
| mucus secreting cell of tracheobronchial tree submucosal gland (CL:4033037) | cellxgene_subset |
| endothelial cell of respiratory system lymphatic vessel (CL:0009086) | cellxgene_subset |
| kidney cortex collecting duct epithelial cell (CL:1000549) | cellxgene_subset |
| medullary thymic epithelial cell type 3 (CL:0009073) | cellxgene_subset |
| lymphatic endothelial cell of subcapsular sinus ceiling (CL:0009107) | cellxgene_subset |
| trigeminal neuron (CL:4023169) | cellxgene_subset |
| hippocampal astrocyte (CL:0002604) | cellxgene_subset |
| vasa recta cell (CL:1001036) | cellxgene_subset |
| L5 intratelencephalic projecting glutamatergic neuron (CL:4030064) | cellxgene_subset |
| renal medullary fibroblast (CL:4030022) | cellxgene_subset |
| salivary gland glandular cell (CL:1001596) | cellxgene_subset |
| luteal cell (CL:0000175) | cellxgene_subset |
| alveolar capillary type 1 endothelial cell (CL:4028002) | cellxgene_subset |
| kidney tubule cell (CL:1000507) | cellxgene_subset |
| serous cell of epithelium of lobular bronchiole (CL:1000333) | cellxgene_subset |
| hippocampal granule cell (CL:0001033) | cellxgene_subset |
| midbrain dopaminergic neuron (CL:2000097) | cellxgene_subset |
| secondary lymphoid organ macrophage (CL:0000867) | cellxgene_subset |
| caudal ganglionic eminence derived cortical interneuron (CL:4023064) | cellxgene_subset |
| ... |
Contributors
dosumis, stevevanhooser, and 5 other contributors
Assets 52
v2025-02-13
Release Notes 2025-02-13
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2864 |
| Number of annotations on CL terms | 13978 |
| Number of synonyms | 6088 |
| Number of unique references | 2137 |
| Number of unique references in definitions | 1642 |
| Number of relationships with CL term as subject | 3982 |
| Number of cellxgene classes | 804 |
| Number of HRA classes | 481 |
Relationships removed: 19
| Subject | Predicate | Object |
|---|---|---|
| kidney afferent arteriole endothelial cell (CL:1001096) | subClassOf (rdfs:subClassOf) | endothelial cell of artery (CL:1000413) |
| tanycyte (CL:0002085) | subClassOf (rdfs:subClassOf) | ependymoglial cell (CL:0000683) |
| mesothelial cell of appendix (CL:0009029) | subClassOf (rdfs:subClassOf) | mesothelial cell (CL:0000077) |
| mesothelial cell of colon (CL:0009025) | subClassOf (rdfs:subClassOf) | mesothelial cell (CL:0000077) |
| ganglion mother cell (CL:0000469) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| mesothelial cell of small intestine (CL:0009024) | subClassOf (rdfs:subClassOf) | mesothelial cell (CL:0000077) |
| obsolete neuronal brush cell (CL:0000555) | subClassOf (rdfs:subClassOf) | central nervous system neuron (CL:2000029) |
| basal cell of olfactory epithelium (CL:0002169) | subClassOf (rdfs:subClassOf) | neural cell (CL:0002319) |
| beta1-tanycyte (CL:4042019) | subClassOf (rdfs:subClassOf) | secretory cell (CL:0000151) |
| tanycyte (CL:0002085) | BFO:0000050 | UBERON:0004670 |
| enterocyte (CL:0000584) | RO:0002202 | early enterocyte (CL:4047019) |
| ganglion mother cell (CL:0000469) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| beta1-tanycyte (CL:4042019) | subClassOf (rdfs:subClassOf) | astrocyte of the forebrain (CL:0012000) |
| olfactory epithelial supporting cell (CL:0000853) | subClassOf (rdfs:subClassOf) | basal cell of olfactory epithelium (CL:0002169) |
| alpha1-tanycyte (CL:4042017) | subClassOf (rdfs:subClassOf) | astrocyte of the forebrain (CL:0012000) |
| basal cell of olfactory epithelium (CL:0002169) | subClassOf (rdfs:subClassOf) | epithelial cell of upper respiratory tract (CL:0002631) |
| M cell of gut (CL:0000682) | subClassOf (rdfs:subClassOf) | epithelial cell of alimentary canal (CL:0002251) |
| basal cell of olfactory epithelium (CL:0002169) | BFO:0000050 | UBERON:0001997 |
| beta2-tanycyte (CL:4042020) | subClassOf (rdfs:subClassOf) | astrocyte of the forebrain (CL:0012000) |
Classes added: 14
| Term |
|---|
| mesothelial cell of intestine (CL:0008041) |
| biliary tuft cell (CL:4052033) |
| age-associated B cell (CL:4033094) |
| stomach smooth muscle inner oblique layer cell (CL:4047037) |
| type 1 submucosal plexus glia (CL:4047043) |
| granzyme H-associated CD8 T cell (CL:4052032) |
| tuft cell of olfactory epithelium (CL:4052037) |
| tuft cell of nasal cavity respiratory epithelium (CL:4052038) |
| smooth muscle circular layer cell (CL:4047040) |
| tuft cell of pancreatic duct (CL:4052035) |
| diffuse bipolar 4a cell (CL:4033095) |
| tuft cell of nasal cavity (CL:4052036) |
| tuft cell of thymus (CL:4052034) |
| diffuse bipolar 4b cell (CL:4033096) |
Relationships added: 61
| Subject | Predicate | Object |
|---|---|---|
| tuft cell of pancreatic duct (CL:4052035) | subClassOf (rdfs:subClassOf) | epithelial cell of exocrine pancreas (CL:1001433) |
| diffuse bipolar 4b cell (CL:4033096) | RO:0002162 | NCBITaxon:9606 |
| tuft cell of olfactory epithelium (CL:4052037) | RO:0002215 | GO:0072091 |
| tuft cell of nasal cavity (CL:4052036) | subClassOf (rdfs:subClassOf) | brush cell (CL:0002204) |
| granzyme H-associated CD8 T cell (CL:4052032) | subClassOf (rdfs:subClassOf) | CD8-positive, alpha-beta memory T cell (CL:0000909) |
| tuft cell of pancreatic duct (CL:4052035) | subClassOf (rdfs:subClassOf) | brush cell (CL:0002204) |
| tuft cell of nasal cavity respiratory epithelium (CL:4052038) | subClassOf (rdfs:subClassOf) | tuft cell of nasal cavity (CL:4052036) |
| tuft cell of thymus (CL:4052034) | BFO:0000050 | UBERON:0003846 |
| tanycyte (CL:0002085) | subClassOf (rdfs:subClassOf) | ependymal cell (CL:0000065) |
| type 1 submucosal plexus glia (CL:4047043) | subClassOf (rdfs:subClassOf) | enteroglial cell (CL:4040002) |
| granzyme H-associated CD8 T cell (CL:4052032) | RO:0002292 | PR:000003490 |
| olfactory epithelial cell (CL:0002167) | subClassOf (rdfs:subClassOf) | epithelial cell of upper respiratory tract (CL:0002631) |
| mesothelial cell of small intestine (CL:0009024) | subClassOf (rdfs:subClassOf) | mesothelial cell of intestine (CL:0008041) |
| olfactory epithelial cell (CL:0002167) | BFO:0000050 | UBERON:0001997 |
| surface ectodermal cell (CL:0000114) | BFO:0000050 | UBERON:0000076 |
| stomach smooth muscle inner oblique layer cell (CL:4047037) | subClassOf (rdfs:subClassOf) | smooth muscle cell (CL:0000192) |
| transit amplifying cell of small intestine (CL:0009012) | subClassOf (rdfs:subClassOf) | epithelial cell of small intestine (CL:0002254) |
| age-associated B cell (CL:4033094) | subClassOf (rdfs:subClassOf) | memory B cell (CL:0000787) |
| tuft cell of thymus (CL:4052034) | subClassOf (rdfs:subClassOf) | brush cell (CL:0002204) |
| transit amplifying cell of appendix (CL:0009027) | subClassOf (rdfs:subClassOf) | epithelial cell of large intestine (CL:0002253) |
| tuft cell of nasal cavity (CL:4052036) | subClassOf (rdfs:subClassOf) | epithelial cell of upper respiratory tract (CL:0002631) |
| tuft cell of nasal cavity respiratory epithelium (CL:4052038) | BFO:0000050 | UBERON:0005385 |
| follicle associated enterocyte (CL:4052011) | BFO:0000050 | UBERON:0004693 |
| diffuse bipolar 4a cell (CL:4033095) | RO:0002162 | NCBITaxon:9606 |
| tuft cell of olfactory epithelium (CL:4052037) | subClassOf (rdfs:subClassOf) | tuft cell of nasal cavity (CL:4052036) |
| tuft cell of thymus (CL:4052034) | RO:0002215 | GO:0002491 |
| diffuse bipolar 4b cell (CL:4033096) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| smooth muscle circular layer cell (CL:4047040) | subClassOf (rdfs:subClassOf) | smooth muscle cell (CL:0000192) |
| olfactory epithelial cell (CL:0002167) | subClassOf (rdfs:subClassOf) | neural cell (CL:0002319) |
| conjunctiva goblet cell (CL:2000084) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (CL:0000076) |
| M cell of gut (CL:0000682) | BFO:0000050 | UBERON:0004693 |
| mesothelial cell of intestine (CL:0008041) | subClassOf (rdfs:subClassOf) | mesothelial cell (CL:0000077) |
| trophectodermal cell (CL:1000274) | BFO:0000050 | UBERON:0004345 |
| transit amplifying cell of gut (CL:4047017) | subClassOf (rdfs:subClassOf) | intestinal epithelial cell (CL:0002563) |
| biliary tuft cell (CL:4052033) | subClassOf (rdfs:subClassOf) | brush cell (CL:0002204) |
| transit amplifying cell of anorectum (CL:0009056) | subClassOf (rdfs:subClassOf) | epithelial cell of large intestine (CL:0002253) |
| basal cell of olfactory epithelium (CL:0002169) | BFO:0000050 | UBERON:0000482 |
| stomach smooth muscle inner oblique layer cell (CL:4047037) | BFO:0000050 | UBERON:0008862 |
| diffuse bipolar 4a cell (CL:4033095) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| smooth muscle circular layer cell (CL:4047040) | BFO:0000050 | UBERON:0012368 |
| tuft cell of pancreatic duct (CL:4052035) | subClassOf (rdfs:subClassOf) | duct epithelial cell (CL:0000068) |
| diffuse bipolar 4a cell (CL:4033095) | subClassOf (rdfs:subClassOf) | ON-bipolar cell (CL:0000749) |
| trophectodermal cell (CL:1000274) | RO:0002203 | trophoblast cell (CL:0000351) |
| neural progenitor cell (CL:0011020) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| tuft cell of olfactory epithelium (CL:4052037) | subClassOf (rdfs:subClassOf) | olfactory epithelial cell (CL:0002167) |
| transit amplifying cell of colon (CL:0009011) | subClassOf (rdfs:subClassOf) | epithelial cell of large intestine (CL:0002253) |
| neural progenitor cell (CL:0011020) | RO:0002202 | neural stem cell (CL:0000047) |
| type 1 submucosal plexus glia (CL:4047043) | BFO:0000050 | UBERON:0009566 |
| tuft cell of thymus (CL:4052034) | subClassOf (rdfs:subClassOf) | medullary thymic epithelial cell (CL:0002365) |
| biliary tuft cell (CL:4052033) | RO:0002215 | GO:0050728 |
| olfactory epithelial supporting cell (CL:0000853) | subClassOf (rdfs:subClassOf) | olfactory epithelial cell (CL:0002167) |
| M cell of gut (CL:0000682) | subClassOf (rdfs:subClassOf) | intestin... |
Contributors
dosumis, AvolaAmg, and 3 other contributors
Assets 52
v2025-01-08
Release Notes 2025-01-08
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2851 |
| Number of annotations on CL terms | 13909 |
| Number of synonyms | 6052 |
| Number of unique references | 2137 |
| Number of unique references in definitions | 1604 |
| Number of relationships with CL term as subject | 3972 |
| Number of cellxgene classes | 804 |
| Number of HRA classes | 481 |
Classes added: 53
| Term |
|---|
| melanin-concentrating hormone neuron (CL:4042036) |
| CGRP-expressing neuron (CL:4042034) |
| liver-resident natural killer cell (CL:4047101) |
| caudal ganglionic eminence derived neuron (CL:4042039) |
| myotendinous junction nucleus (CL:4052024) |
| immature neuron (CL:4042028) |
| secretory pericyte (CL:4047032) |
| pituitary gland capillary endothelial cell (CL:4052016) |
| fallopian tube non-ciliated cell (CL:4052019) |
| limbal epithelial stem cell of cornea (CL:4033093) |
| externa theca cell (CL:4052013) |
| immune oligodendroglia (CL:4042031) |
| subpleural fibroblast (CL:4052029) |
| type IIx muscle cell (CL:4052026) |
| intestinal lamina propria fibroblast (CL:4047023) |
| stomach smooth muscle outer longitudinal layer cell (CL:4047035) |
| adventitial fibroblast (CL:4052030) |
| atretic follicular cell of ovary (CL:4033089) |
| respiratory airway secretory cell (CL:4052031) |
| uterine natural killer cell (CL:4052028) |
| granzyme K-associated CD8 T cell (CL:4052021) |
| atretic theca cell (CL:4052027) |
| PAX6 GABAergic cortical interneuron (CL:4042032) |
| endocrine gland capillary endothelial cell (CL:4052015) |
| smooth muscle cell of stomach (CL:4047034) |
| secretory epithelial cell (CL:1100001) |
| transit amplifying cell of gut (CL:4047017) |
| cortical immature neuron (CL:4042029) |
| pro-opiomelanocortin neuron (CL:4042033) |
| sst GABAergic neuron of the striatum (CL:4042037) |
| decidual resident macrophage (CL:4033088) |
| rostral primary motorneuron (CL:4042038) |
| glycinergic-GABAergic amacrine cell (CL:4033091) |
| lipid-associated macrophage (CL:4033086) |
| choroid plexus capillary endothelial cell (CL:4052017) |
| candelabrum cell (CL:4042030) |
| glutamatergic neuron of the basal ganglia (CL:4042040) |
| molecular layer interneuron (CL:4042035) |
| type G cell of stomach (CL:4047025) |
| fallopian tube epithelial cell (CL:4052018) |
| fallopian tube smooth muscle cell (CL:4052022) |
| interna theca cell (CL:4052012) |
| placental resident macrophage (CL:4033087) |
| pre-venule capillary cell (CL:4047030) |
| pancreatic islet capillary endothelial cell (CL:4052014) |
| middle primary motoneuron (CL:4042041) |
| diffuse bipolar 5 cell (CL:4033085) |
| CD57-positive enterocyte (CL:4033092) |
| post-arteriole capillary cell (CL:4047029) |
| lung resident granzyme K-associated CD8 T cell (CL:4052020) |
| luminal endometrial unciliated epithelial cell (CL:4052023) |
| atretic granulosa cell (CL:4033090) |
| neuromuscular junction nucleus (CL:4052025) |
Synonyms added: 116
| Term | New Synonym | Predicate |
|---|---|---|
| limbal epithelial stem cell of cornea (CL:4033093) | LESC | oio:hasRelatedSynonym |
| pro-opiomelanocortin neuron (CL:4042033) | POMC-expressing neuron | oio:hasRelatedSynonym |
| fallopian tube smooth muscle cell (CL:4052022) | oviduct smooth muscle cell | oio:hasBroadSynonym |
| neuromuscular junction nucleus (CL:4052025) | NMJ nuclues | oio:hasRelatedSynonym |
| CGRP-expressing neuron (CL:4042034) | CGRP-expressing interneuron | oio:hasRelatedSynonym |
| decidual cell (CL:2000002) | decidualized endometrial stromal cell | oio:hasExactSynonym |
| oviduct secretory cell (CL:1001591) | oviduct glandular cell | oio:hasRelatedSynonym |
| respiratory tract multiciliated cell (CL:4030034) | respiratory ciliated cell | oio:hasExactSynonym |
| type IIx muscle cell (CL:4052026) | type 2x muscle fiber | oio:hasExactSynonym |
| decidual resident macrophage (CL:4033088) | maternal decidual macrophage | oio:hasBroadSynonym |
| duodenum secretory cell (CL:1001589) | duodenum glandular cells | oio:hasNarrowSynonym |
| transit amplifying cell of gut (CL:4047017) | transit-amplifying cell | oio:hasBroadSynonym |
| diffuse bipolar 5 cell (CL:4033085) | DB5 cell | oio:hasRelatedSynonym |
| respiratory tract hillock cell (CL:4030023) | hillock cell of respiratory tract | oio:hasExactSynonym |
| granzyme K-associated CD8 T cell (CL:4052021) | granzyme K+ CD8 T cell | oio:hasExactSynonym |
| cortical immature neuron (CL:4042029) | cIN | oio:hasRelatedSynonym |
| luminal endometrial unciliated epithelial cell (CL:4052023) | luminal cell of endometrium | oio:hasBroadSynonym |
| pulmonary neuroendocrine cell (CL:1000223) | lung neuroendocrine cell | oio:hasExactSynonym |
| polymodal neuron (CL:0000102) | polymodal sensory neuron | oio:hasRelatedSynonym |
| liver-resident natural killer cell (CL:4047101) | liver NK cell | oio:hasExactSynonym |
| respiratory tract suprabasal cell (CL:4033048) | respiratory suprabasal cell | oio:hasExactSynonym |
| liver-resident natural killer cell (CL:4047101) | he-NK | oio:hasExactSynonym |
| fallopian tube multiciliated cell (CL:4030007) | fallopian tube ciliated cell | oio:hasExactSynonym |
| molecular layer interneuron (CL:4042035) | MLI | oio:hasRelatedSynonym |
| CAP motoneuron (CL:0000532) | caudal primary motor neuron | oio:hasRelatedSynonym |
| immature neuron (CL:4042028) | IN | oio:hasRelatedSynonym |
| fallopian tube smooth muscle cell (CL:4052022) | uterine tube smooth muscle cell | oio:hasExactSynonym |
| skin sebocyte (CL:0002140) | acinar cell of sebaceous gland | oio:hasBroadSynonym |
| interna theca cell (CL:4052012) | interna TC | oio:hasRelatedSynonym |
| lipid-associated macrophage (CL:4033086) | LAM | oio:hasRelatedSynonym |
| myotendinous junction nucleus (CL:4052024) | myotendinous junction myonuclei | oio:hasExactSynonym |
| liver-resident natural killer cell (CL:4047101) | intrahepatic NK | oio:hasExactSynonym |
| respiratory airway secretory cell (CL:4052031) | terminal and respiratory bronchioles secretory cell | oio:hasRelatedSynonym |
| myotendinous junction nucleus (CL:4052024) | MTJ nucleus | oio:hasRelatedSynonym |
| multiciliated epithelial cell (CL:0005012) | multi-ciliated epithelial cell | oio:hasExactSynonym |
| fallopian tube epithelial cell (CL:4052018) | oviduct epithelial cell | oio:hasBroadSynonym |
| uterine natural killer cell (CL:4052028) | endometrial natural killer cell | oio:hasNarrowSynonym |
| lung resident granzyme K-associated CD8 T cell (CL:4052020) | lung resident CD8-GZMK | oio:hasRelatedSynonym |
| pre-venule capillary cell (CL:4047030) | Cap-Venous endothelial cell | oio:hasExactSynonym |
| stomach neuroendocrine cell (CL:1000222) | diffuse endocrine system cell | oio:hasBroadSynonym |
| candelabrum cell (CL:4042030) | candelabrum interneuron | oio:hasExactSynonym |
| respiratory tract hillock cell (CL:4030023) | respiratory hillock cell | oio:hasExactSynonym |
| granzyme K-associated CD8 T cell (CL:4052021) | CD8-GZMK cell | oio:hasRelatedSynonym |
| melanin-concentrating hormone neuron (CL:4042036) | MCH neuron | oio:hasRelatedSynonym |
| Lugaro cell (CL:0011006) | globular cell | oio:hasRelatedSynonym |
| fallopian tube epithelial cell (CL:4052018) | uterine tube epithelial cell | oio:hasExactSynonym |
| stomach neuroendocrine cell (CL:1000222) | DES cell | oio:hasBroadSynonym |
| pancreatic islet capillary endothelial cell (CL:4052014) | islet endothelial cell | oio:hasBroadSynonym |
| liver-resident natural killer cell (CL:4047101) | hepatic NK | oio:hasExactSynonym |
| CGRP-expressing neuron (CL:4042034) | CGRP-positive neuron | oio:hasRelatedSynonym |
| sst GABAergic neuron of the striatum (CL:4042037) | striatal SST+ IN | oio:hasRelatedSynonym |
| respiratory tract epithelial cell (CL:0002368) | respiratory epithelial cell | oio:hasExactSynonym |
| middle primary motoneuron (CL:4042041) | MiP | oio:hasRelatedSynonym |
| interna theca cell (CL:4052012) | inTC | oio:hasRelatedSynonym |
| neuromuscular junction nucleus (CL:4052025) | neuromuscular junction nuclei | oio:hasExactSynonym |
| skin sebocyte (CL:0002140) | acinar cell of skin sebaceous gland | oio:hasExactSynonym |
| candelabrum cell (CL:4042030) | CC | oio:hasRelatedSynonym |
| epididymis secretory cell (CL:1001590) | epididymis glandular cell | oio:hasRelatedSynonym |
| respiratory airway secretory cell (CL:4052031) | RAS cell | oio:hasRelatedSynonym |
| externa theca cell (CL:4052013) | externa TC | oio:hasRelatedSynonym |
| liver-resident natural killer cell (CL:4047101) | lr-NK | oio:hasExactSynonym |
| externa theca cell (CL:4052013) | exTC | oio:hasRelatedSynonym |
| luminal endometrial unciliated epithelial cell (CL:4052023) | endometrial luminal epithelial cell | oio:hasBroadSynonym |
| lung multiciliated epithelial cell (CL:1000271) | lung ciliated cell | oio:hasExactSynonym |
| intestinal lamina propria fibroblast (CL:4047023) | S1 fibroblast | oio:hasRelatedSynonym |
| CD57-positive enterocyte (CL:4033092) | CD57+ enterocyte | oio:hasExactSynonym |
| glandular endometrial multiciliated epithelial cell (CL:4030042) | glandular endometrial ciliated epithelial cell | oio:hasExactSynonym |
| glycinergic-GABAergic amacrine cell (CL:4033091) | glycinergic/GABAergic amacrine neuron | oio:hasExactSynonym |
| immune oligodendroglia (CL:4042031) | immune oligodendrocyte | oio:hasExactSynonym |
| pancreatic islet capillary endothelial cell (CL:4052014) | pancreatic islet endothelial cell | oio:hasBroadSynonym |
| ... |
Contributors
dosumis, gouttegd, and 4 other contributors
Assets 52
v2024-09-26
Release Notes 2024-09-26
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2801 |
| Number of annotations on CL terms | 13346 |
| Number of synonyms | 5894 |
| Number of unique references | 2039 |
| Number of unique references in definitions | 1465 |
| Number of relationships with CL term as subject | 3815 |
| Number of cellxgene classes | 686 |
| Number of HRA classes | 495 |
Relationships added: 389
| Subject | Predicate | Object |
|---|---|---|
| preameloblast (CL:0007000) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| beta2-tanycyte (CL:4042020) | RO:0002292 | PR:000007479 |
| mature T cell (CL:0002419) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| L6 th sst GABAergic interneuron (Mmus) (CL:4023075) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| cumulus cell (CL:0000711) | subClassOf (rdfs:subClassOf) | granulosa cell (CL:0000501) |
| intestinal subserosal fibroblast (CL:4052005) | BFO:0000050 | UBERON:0012375 |
| CD27-low, CD11b-low immature natural killer cell, mouse (CL:0002345) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| DN2 thymocyte (CL:0000806) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| substantia nigra dopaminergic neuron (CL:4042025) | subClassOf (rdfs:subClassOf) | neuron of the substantia nigra (CL:0002614) |
| lung secretory cell (CL:1000272) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| mesenchymal cell (CL:0008019) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| CD16-negative, CD56-bright natural killer cell, human (CL:0000938) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| Kit-negative, Ly-76 high orthochromatophilic erythroblasts (CL:0002017) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| endocrine cell (CL:0000163) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| reticulocyte (CL:0000558) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| beta1-tanycyte (CL:4042019) | RO:0002292 | PR:000007479 |
| neuroglioblast (sensu Nematoda and Protostomia) (CL:0000468) | RO:0002162 | NCBITaxon:33317 |
| astrocyte-restricted precursor (CL:4042022) | RO:0002203 | astrocyte (CL:0000127) |
| iridophore (CL:0000431) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| choroid plexus epithelial cell (CL:0000706) | subClassOf (rdfs:subClassOf) | brush border epithelial cell (CL:0000239) |
| single nucleate cell (CL:0000226) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| squamous epithelial cell (CL:0000076) | BFO:0000050 | UBERON:0006914 |
| salivary gland glandular cell (CL:1001596) | subClassOf (rdfs:subClassOf) | salivary gland cell (CL:0009005) |
| spermatid (CL:0000018) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| erythrophore (CL:0000574) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| memory CCR4-positive regulatory T cell (CL:0001046) | RO:0002162 | NCBITaxon:9606 |
| subepithelial intestinal fibroblast (CL:4052007) | subClassOf (rdfs:subClassOf) | fibroblast (CL:0000057) |
| myeloid suppressor cell (CL:0000889) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| oxytocin receptor sst GABAergic cortical interneuron (CL:4023122) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| CD56-positive, CD161-positive immature natural killer cell, human (CL:0002338) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human (CL:0001074) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| invertebrate nurse cell (CL:0000026) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| cumulus cell (CL:0000711) | RO:0002202 | cuboidal granulosa cell (CL:4033084) |
| plasma cell (CL:0000786) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| oocyte (CL:0000023) | RO:0002162 | NCBITaxon:33208 |
| neuronal-restricted precursor (CL:4042021) | subClassOf (rdfs:subClassOf) | neuron associated cell (sensu Vertebrata) (CL:0000123) |
| Eumycetozoan cell (CL:0000257) | RO:0002162 | NCBITaxon:142796 |
| glioblast (CL:0000030) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| macrophage derived foam cell (CL:0000517) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| adepithelial cell (CL:0000462) | RO:0002162 | NCBITaxon:50557 |
| L4 sst Martinotti interneuron (Mmus) (CL:4023031) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| connective tissue cell (CL:0002320) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| mural granulosa cell (CL:4033067) | subClassOf (rdfs:subClassOf) | granulosa cell (CL:0000501) |
| sebaceous gland cell (CL:2000021) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| muscle precursor cell (CL:0000680) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| intestinal subserosal fibroblast (CL:4052005) | BFO:0000050 | UBERON:0001243 |
| luminal hormone-sensing cell of mammary gland (CL:4033058) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| endothelial cell (CL:0000115) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| cell of skeletal muscle (CL:0000188) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| xanthophore cell (CL:0000430) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| lung ciliated cell (CL:1000271) | subClassOf (rdfs:subClassOf) | ciliated epithelial cell (CL:0000067) |
| cystoblast (CL:0000722) | RO:0002162 | NCBITaxon:6656 |
| elicited macrophage (CL:0000861) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| sperm (CL:0000019) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| CD7-positive lymphoid progenitor cell (CL:0001028) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| sst GABAergic cortical interneuron (CL:4023017) | subClassOf (rdfs:subClassOf) | medial ganglionic eminence derived GABAergic cortical interneuron (CL:4023069) |
| intestinal fibroblastic reticular cell (CL:4052004) | BFO:0000050 | UBERON:0001962 |
| striated cell of salivary gland (CL:4052049) | RO:0002215 | GO:0036376 |
| neuromast mantle cell (CL:0000851) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| circulating cell (CL:0000080) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| small intestine BEST4+ enterocyte (CL:4047051) | subClassOf (rdfs:subClassOf) | BEST4+ enteroycte (CL:4030026) |
| group 2 innate lymphoid cell, human (CL:0001081) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| corneocyte (CL:0002153) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| transit amplifying cell (CL:0009010) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| leukocyte (CL:0000738) | RO:0002162 | NCBITaxon:7742 |
| cuboidal granulosa cell (CL:4033084) | subClassOf (rdfs:subClassOf) | granulosa cell (CL:0000501) |
| morula cell (CL:0000360) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell (CL:0002023) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| L5 sst T-Martinotti interneuron (Mmus) (CL:4023027) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| L2/3/5 fan Martinotti sst GABAergic interneuron (Mmus) (CL:4023030) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| basophil mast progenitor cell (CL:0002028) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| pvalb GABAergic cortical interneuron (CL:4023018) | subClassOf (rdfs:subClassOf) | medial ganglionic eminence derived GABAergic cortical interneuron (CL:4023069) |
| group 3 innate lymphoid cell (CL:0001071) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| intestinal enteroendocrine progenitor (CL:4052006) | subClassOf (rdfs:subClassOf) | intestinal epithelial cell (CL:0002563) |
| intestinal subserosal fibroblast (CL:4052005) | subClassOf (rdfs:subClassOf) | fibroblast (CL:0000057) |
| melanocyte (CL:0000148) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| stem cell (CL:0000034) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| CD9-positive, CD41-positive megakaryocyte cell (CL:0002027) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| cuboidal granulosa cell (CL:4033084) | RO:0002207 | squamous granulosa cell (CL:4033083) |
| hematopoietic lineage restricted progenitor cell (CL:0002031) | subClassOf (rdfs:subClassOf) | eukaryotic cel... |
Contributors
dosumis, anitacaron, and 7 other contributors