Fixes #3427 NTR- epithelium of anorectum #3430

Caroline-99 · 2024-11-19T12:43:04Z

Added a new term.

Needed for CL #2674

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

github-actions

Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

github-actions · 2025-01-17T02:09:25Z

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

src/ontology/uberon-edit.obo

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

github-actions · 2025-03-10T02:01:18Z

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

github-actions · 2025-04-10T02:23:23Z

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

Added a new term.

…eference

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

src/ontology/uberon-edit.obo

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

gouttegd · 2025-05-12T12:44:33Z

#gogoeditdiff

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Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.

gouttegd · 2025-05-12T14:31:54Z

#gogoeditdiff

github-actions · 2025-05-12T14:43:58Z

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2025-05-12/uberon-base.owl
Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-main.owl/uberon-base.owl

Right

Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2025-05-12/uberon-base.owl
Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-pr.owl/uberon-base.owl

Ontology imports

Ontology annotations

epithelium of anorectum `http://purl.obolibrary.org/obo/UBERON_8850001`

Added

epithelium of anorectum contributor 0009-0000-8480-9277
epithelium of anorectum id "UBERON:8850001"
epithelium of anorectum date "2024-11-18T15:45:29Z"^^dateTime
epithelium of anorectum IAO_0000115 "The epithelium that lines the anorectum."
- hasDbXref "PMID:27042391"
epithelium of anorectum hasOBONamespace "uberon"
epithelium of anorectum label "epithelium of anorectum"
epithelium of anorectum hasExactSynonym "anorectal epithelium"
- hasDbXref "PMID:27042391"
Class: epithelium of anorectum
epithelium of anorectum EquivalentTo epithelium and (BFO_0000050 some anorectum)
epithelium of anorectum SubClassOf epithelium of large intestine
epithelium of anorectum SubClassOf BFO_0000050 some anorectum

obsolete median fin skeleton `http://purl.obolibrary.org/obo/UBERON_0002543`

Removed

obsolete median fin skeleton consider EFO_0000950

Added

obsolete median fin skeleton consider EFO_0000950

obsolete tuber `http://purl.obolibrary.org/obo/UBERON_0000380`

Removed

obsolete tuber consider EFO_0001015

Added

obsolete tuber consider EFO_0001015

github-actions · 2025-05-12T14:44:01Z

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
Version IRI: None
Loaded from: file:/__w/uberon/uberon/master/src/ontology/uberon-edit.obo

Right

Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
Version IRI: None
Loaded from: file:/__w/uberon/uberon/branch/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

epithelium of anorectum `http://purl.obolibrary.org/obo/UBERON_8850001`

Added

epithelium of anorectum contributor 0009-0000-8480-9277
epithelium of anorectum id "UBERON:8850001"^^string
epithelium of anorectum date "2024-11-18T15:45:29Z"^^dateTime
epithelium of anorectum definition "The epithelium that lines the anorectum."^^string
- database_cross_reference "PMID:27042391"^^string
epithelium of anorectum has_obo_namespace "uberon"^^string
epithelium of anorectum label "epithelium of anorectum"^^string
epithelium of anorectum has_exact_synonym "anorectal epithelium"^^string
- database_cross_reference "PMID:27042391"^^string
Class: epithelium of anorectum
epithelium of anorectum EquivalentTo epithelium and (part of some anorectum)

obsolete median fin skeleton `http://purl.obolibrary.org/obo/UBERON_0002543`

Removed

obsolete median fin skeleton consider EFO_0000950

Added

obsolete median fin skeleton consider EFO_0000950

obsolete tuber `http://purl.obolibrary.org/obo/UBERON_0000380`

Removed

obsolete tuber consider EFO_0001015

Added

obsolete tuber consider EFO_0001015

github-actions · 2025-06-12T02:42:54Z

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

KrishnaTO · 2026-01-15T18:41:10Z

@matentzn should be good to rebase

matentzn

Based on some previous approval by @gouttegd I also approve. Can be merged.

AI

github-actions · 2026-01-16T11:09:51Z

This PR modifies some logical definitions. See details below:

Number of classes with modified logical definitions: 1

epithelium of anorectum

No changes in inferred subclasses.

The idspace issue no longer relevant for this PR

matentzn

One final tweak

Caroline-99 linked an issue Nov 19, 2024 that may be closed by this pull request

epithelium of anorectum #3427

Closed

github-actions bot requested a review from cmungall November 19, 2024 12:46

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Caroline-99 added 4 commits April 23, 2025 23:21

Fixes #3427

d997659

Added a new term.

Update uberon-edit.obo

e3ab9a6

Update uberon-edit.obo

332d073

Added a cross reference for the definition and exact synonym with a r…

e203aeb

…eference

cmungall force-pushed the 3427-epithelium-of-anorectum branch from b3200ac to e203aeb Compare April 24, 2025 03:21

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Merge branch 'master' into 3427-epithelium-of-anorectum

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aleixpuigb reviewed May 8, 2025

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Merge branch 'master' into 3427-epithelium-of-anorectum

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gouttegd previously approved these changes May 12, 2025

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Merge branch 'master' into 3427-epithelium-of-anorectum

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Merge branch 'master' into 3427-epithelium-of-anorectum

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matentzn dismissed stale reviews from gouttegd and aleixpuigb via 9f643cf January 16, 2026 11:07

matentzn previously approved these changes Jan 16, 2026

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Update uberon-edit.obo

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matentzn dismissed their stale review via 0d3d3bd January 16, 2026 11:10

matentzn approved these changes Jan 16, 2026

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matentzn merged commit 275f817 into master Jan 16, 2026
4 checks passed

matentzn deleted the 3427-epithelium-of-anorectum branch January 16, 2026 11:31

Fixes #3427 NTR- epithelium of anorectum #3430

Fixes #3427 NTR- epithelium of anorectum #3430

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Caroline-99 commented Nov 19, 2024

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gouttegd commented May 12, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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gouttegd commented May 12, 2025

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Ontology comparison

Left

Right

Ontology imports

Ontology annotations

epithelium of anorectum http://purl.obolibrary.org/obo/UBERON_8850001

Added

obsolete median fin skeleton http://purl.obolibrary.org/obo/UBERON_0002543

Removed

Added

obsolete tuber http://purl.obolibrary.org/obo/UBERON_0000380

Removed

Added

Uh oh!

github-actions bot commented May 12, 2025

Ontology comparison

Left

Right

Ontology imports

Ontology annotations

epithelium of anorectum http://purl.obolibrary.org/obo/UBERON_8850001

Added

obsolete median fin skeleton http://purl.obolibrary.org/obo/UBERON_0002543

Removed

Added

obsolete tuber http://purl.obolibrary.org/obo/UBERON_0000380

Removed

Added

gouttegd commented May 12, 2025 •

edited

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epithelium of anorectum `http://purl.obolibrary.org/obo/UBERON_8850001`

obsolete median fin skeleton `http://purl.obolibrary.org/obo/UBERON_0002543`

obsolete tuber `http://purl.obolibrary.org/obo/UBERON_0000380`

epithelium of anorectum `http://purl.obolibrary.org/obo/UBERON_8850001`

obsolete median fin skeleton `http://purl.obolibrary.org/obo/UBERON_0002543`

obsolete tuber `http://purl.obolibrary.org/obo/UBERON_0000380`

KrishnaTO commented Jan 15, 2026 •

edited

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