starting build "b4832c6a-073d-4fbc-93dc-8cdd0b79735a"

FETCHSOURCE
From https://github.com/google/fhir-data-pipes
 * branch            2864c864fad529d00585035c2bf6e56381d3a407 -> FETCH_HEAD
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HEAD is now at 2864c86 Bump com.fasterxml.jackson.module:jackson-module-scala_2.11
GitCommit:
2864c864fad529d00585035c2bf6e56381d3a407
BUILD
Starting Step #0 - "Launch HAPI Source Server"
Starting Step #5 - "Build Uploader Image"
Starting Step #1 - "Launch Sink Server Search"
Starting Step #2 - "Launch Sink Server JDBC"
Starting Step #4 - "Compile Bunsen and Pipeline"
Starting Step #7 - "Build E2E Image"
Step #0 - "Launch HAPI Source Server": Pulling image: docker/compose
Step #1 - "Launch Sink Server Search": Pulling image: docker/compose
Step #2 - "Launch Sink Server JDBC": Pulling image: docker/compose
Step #4 - "Compile Bunsen and Pipeline": Pulling image: maven:3.8.5-openjdk-17
Step #5 - "Build Uploader Image": Already have image (with digest): gcr.io/cloud-builders/docker
Step #7 - "Build E2E Image": Already have image (with digest): gcr.io/cloud-builders/docker
Step #1 - "Launch Sink Server Search": Using default tag: latest
Step #0 - "Launch HAPI Source Server": Using default tag: latest
Step #2 - "Launch Sink Server JDBC": Using default tag: latest
Step #5 - "Build Uploader Image": Sending build context to Docker daemon   1.47MB

Step #5 - "Build Uploader Image": Step 1/10 : FROM python:3.7-slim
Step #1 - "Launch Sink Server Search": latest: Pulling from docker/compose
Step #1 - "Launch Sink Server Search": aad63a933944: Pulling fs layer
Step #1 - "Launch Sink Server Search": b396cd7cbac4: Pulling fs layer
Step #1 - "Launch Sink Server Search": 0426ec0ed60a: Pulling fs layer
Step #1 - "Launch Sink Server Search": 9ac2a98ece5b: Pulling fs layer
Step #1 - "Launch Sink Server Search": b396cd7cbac4: Verifying Checksum
Step #1 - "Launch Sink Server Search": b396cd7cbac4: Download complete
Step #7 - "Build E2E Image": Sending build context to Docker daemon  65.61MB

Step #7 - "Build E2E Image": Step 1/12 : FROM maven:3.8.7-eclipse-temurin-17-focal
Step #0 - "Launch HAPI Source Server": latest: Pulling from docker/compose
Step #0 - "Launch HAPI Source Server": aad63a933944: Pulling fs layer
Step #0 - "Launch HAPI Source Server": b396cd7cbac4: Pulling fs layer
Step #0 - "Launch HAPI Source Server": 0426ec0ed60a: Pulling fs layer
Step #0 - "Launch HAPI Source Server": 9ac2a98ece5b: Pulling fs layer
Step #0 - "Launch HAPI Source Server": b396cd7cbac4: Download complete
Step #2 - "Launch Sink Server JDBC": latest: Pulling from docker/compose
Step #2 - "Launch Sink Server JDBC": aad63a933944: Pulling fs layer
Step #2 - "Launch Sink Server JDBC": b396cd7cbac4: Pulling fs layer
Step #2 - "Launch Sink Server JDBC": 0426ec0ed60a: Pulling fs layer
Step #2 - "Launch Sink Server JDBC": 9ac2a98ece5b: Pulling fs layer
Step #2 - "Launch Sink Server JDBC": b396cd7cbac4: Download complete
Step #1 - "Launch Sink Server Search": aad63a933944: Verifying Checksum
Step #2 - "Launch Sink Server JDBC": aad63a933944: Verifying Checksum
Step #2 - "Launch Sink Server JDBC": aad63a933944: Download complete
Step #1 - "Launch Sink Server Search": aad63a933944: Download complete
Step #0 - "Launch HAPI Source Server": aad63a933944: Verifying Checksum
Step #0 - "Launch HAPI Source Server": aad63a933944: Download complete
Step #2 - "Launch Sink Server JDBC": 9ac2a98ece5b: Verifying Checksum
Step #0 - "Launch HAPI Source Server": 9ac2a98ece5b: Verifying Checksum
Step #2 - "Launch Sink Server JDBC": 9ac2a98ece5b: Download complete
Step #1 - "Launch Sink Server Search": 9ac2a98ece5b: Verifying Checksum
Step #1 - "Launch Sink Server Search": 9ac2a98ece5b: Download complete
Step #0 - "Launch HAPI Source Server": 9ac2a98ece5b: Download complete
Step #4 - "Compile Bunsen and Pipeline": 3.8.5-openjdk-17: Pulling from library/maven
Step #2 - "Launch Sink Server JDBC": aad63a933944: Pull complete
Step #1 - "Launch Sink Server Search": aad63a933944: Pull complete
Step #0 - "Launch HAPI Source Server": aad63a933944: Pull complete
Step #1 - "Launch Sink Server Search": b396cd7cbac4: Pull complete
Step #2 - "Launch Sink Server JDBC": b396cd7cbac4: Pull complete
Step #0 - "Launch HAPI Source Server": b396cd7cbac4: Pull complete
Step #5 - "Build Uploader Image": 3.7-slim: Pulling from library/python
Step #4 - "Compile Bunsen and Pipeline": 38a980f2cc8a: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": de849f1cfbe6: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": a7203ca35e75: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": 3337662e6dc9: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": 81485058ab89: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Waiting
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Waiting
Step #7 - "Build E2E Image": 3.8.7-eclipse-temurin-17-focal: Pulling from library/maven
Step #0 - "Launch HAPI Source Server": 0426ec0ed60a: Verifying Checksum
Step #0 - "Launch HAPI Source Server": 0426ec0ed60a: Download complete
Step #2 - "Launch Sink Server JDBC": 0426ec0ed60a: Download complete
Step #1 - "Launch Sink Server Search": 0426ec0ed60a: Download complete
Step #5 - "Build Uploader Image": a803e7c4b030: Pulling fs layer
Step #5 - "Build Uploader Image": bf3336e84c8e: Pulling fs layer
Step #5 - "Build Uploader Image": 8973eb85275f: Pulling fs layer
Step #5 - "Build Uploader Image": f9afc3cc0135: Pulling fs layer
Step #5 - "Build Uploader Image": 39312d8b4ab7: Pulling fs layer
Step #5 - "Build Uploader Image": bf3336e84c8e: Waiting
Step #5 - "Build Uploader Image": 8973eb85275f: Waiting
Step #5 - "Build Uploader Image": f9afc3cc0135: Waiting
Step #5 - "Build Uploader Image": 39312d8b4ab7: Waiting
Step #5 - "Build Uploader Image": a803e7c4b030: Waiting
Step #4 - "Compile Bunsen and Pipeline": 81485058ab89: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": 81485058ab89: Download complete
Step #4 - "Compile Bunsen and Pipeline": de849f1cfbe6: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": de849f1cfbe6: Download complete
Step #7 - "Build E2E Image": 7608715873ec: Pulling fs layer
Step #7 - "Build E2E Image": 64a0b7566174: Pulling fs layer
Step #7 - "Build E2E Image": 414e25888ba9: Pulling fs layer
Step #7 - "Build E2E Image": fa1796814410: Pulling fs layer
Step #7 - "Build E2E Image": dc3ab4515b24: Pulling fs layer
Step #7 - "Build E2E Image": 495d1ae42cb9: Pulling fs layer
Step #7 - "Build E2E Image": 7608715873ec: Waiting
Step #7 - "Build E2E Image": 66b6d86e5b33: Pulling fs layer
Step #7 - "Build E2E Image": 64a0b7566174: Waiting
Step #7 - "Build E2E Image": 90062ecd5dec: Pulling fs layer
Step #7 - "Build E2E Image": 414e25888ba9: Waiting
Step #7 - "Build E2E Image": fa1796814410: Waiting
Step #7 - "Build E2E Image": dc3ab4515b24: Waiting
Step #7 - "Build E2E Image": 66b6d86e5b33: Waiting
Step #7 - "Build E2E Image": 495d1ae42cb9: Waiting
Step #7 - "Build E2E Image": 90062ecd5dec: Waiting
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Download complete
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Download complete
Step #4 - "Compile Bunsen and Pipeline": 38a980f2cc8a: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": 38a980f2cc8a: Download complete
Step #2 - "Launch Sink Server JDBC": 0426ec0ed60a: Pull complete
Step #0 - "Launch HAPI Source Server": 0426ec0ed60a: Pull complete
Step #1 - "Launch Sink Server Search": 0426ec0ed60a: Pull complete
Step #5 - "Build Uploader Image": bf3336e84c8e: Download complete
Step #2 - "Launch Sink Server JDBC": 9ac2a98ece5b: Pull complete
Step #0 - "Launch HAPI Source Server": 9ac2a98ece5b: Pull complete
Step #1 - "Launch Sink Server Search": 9ac2a98ece5b: Pull complete
Step #1 - "Launch Sink Server Search": Digest: sha256:b60a020c0f68047b353a4a747f27f5e5ddb17116b7b018762edfb6f7a6439a82
Step #2 - "Launch Sink Server JDBC": Digest: sha256:b60a020c0f68047b353a4a747f27f5e5ddb17116b7b018762edfb6f7a6439a82
Step #0 - "Launch HAPI Source Server": Digest: sha256:b60a020c0f68047b353a4a747f27f5e5ddb17116b7b018762edfb6f7a6439a82
Step #1 - "Launch Sink Server Search": Status: Downloaded newer image for docker/compose:latest
Step #2 - "Launch Sink Server JDBC": Status: Downloaded newer image for docker/compose:latest
Step #0 - "Launch HAPI Source Server": Status: Image is up to date for docker/compose:latest
Step #1 - "Launch Sink Server Search": docker.io/docker/compose:latest
Step #0 - "Launch HAPI Source Server": docker.io/docker/compose:latest
Step #2 - "Launch Sink Server JDBC": docker.io/docker/compose:latest
Step #5 - "Build Uploader Image": f9afc3cc0135: Download complete
Step #5 - "Build Uploader Image": 8973eb85275f: Verifying Checksum
Step #5 - "Build Uploader Image": 8973eb85275f: Download complete
Step #5 - "Build Uploader Image": 39312d8b4ab7: Verifying Checksum
Step #5 - "Build Uploader Image": 39312d8b4ab7: Download complete
Step #5 - "Build Uploader Image": a803e7c4b030: Verifying Checksum
Step #5 - "Build Uploader Image": a803e7c4b030: Download complete
Step #7 - "Build E2E Image": 7608715873ec: Download complete
Step #7 - "Build E2E Image": 64a0b7566174: Verifying Checksum
Step #7 - "Build E2E Image": 64a0b7566174: Download complete
Step #7 - "Build E2E Image": fa1796814410: Download complete
Step #4 - "Compile Bunsen and Pipeline": 3337662e6dc9: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": 3337662e6dc9: Download complete
Step #4 - "Compile Bunsen and Pipeline": a7203ca35e75: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": a7203ca35e75: Download complete
Step #7 - "Build E2E Image": 66b6d86e5b33: Verifying Checksum
Step #7 - "Build E2E Image": 66b6d86e5b33: Download complete
Step #7 - "Build E2E Image": 495d1ae42cb9: Verifying Checksum
Step #7 - "Build E2E Image": 495d1ae42cb9: Download complete
Step #7 - "Build E2E Image": dc3ab4515b24: Verifying Checksum
Step #7 - "Build E2E Image": dc3ab4515b24: Download complete
Step #7 - "Build E2E Image": 90062ecd5dec: Download complete
Step #4 - "Compile Bunsen and Pipeline": 38a980f2cc8a: Pull complete
Step #7 - "Build E2E Image": 7608715873ec: Pull complete
Step #5 - "Build Uploader Image": a803e7c4b030: Pull complete
Step #7 - "Build E2E Image": 414e25888ba9: Verifying Checksum
Step #7 - "Build E2E Image": 414e25888ba9: Download complete
Step #4 - "Compile Bunsen and Pipeline": de849f1cfbe6: Pull complete
Step #5 - "Build Uploader Image": bf3336e84c8e: Pull complete
Step #7 - "Build E2E Image": 64a0b7566174: Pull complete
Step #5 - "Build Uploader Image": 8973eb85275f: Pull complete
Step #5 - "Build Uploader Image": f9afc3cc0135: Pull complete
Step #5 - "Build Uploader Image": 39312d8b4ab7: Pull complete
Step #5 - "Build Uploader Image": Digest: sha256:b53f496ca43e5af6994f8e316cf03af31050bf7944e0e4a308ad86c001cf028b
Step #5 - "Build Uploader Image": Status: Downloaded newer image for python:3.7-slim
Step #5 - "Build Uploader Image":  ---> a255ffcb469f
Step #5 - "Build Uploader Image": Step 2/10 : WORKDIR /uploader
Step #4 - "Compile Bunsen and Pipeline": a7203ca35e75: Pull complete
Step #7 - "Build E2E Image": 414e25888ba9: Pull complete
Step #7 - "Build E2E Image": fa1796814410: Pull complete
Step #7 - "Build E2E Image": dc3ab4515b24: Pull complete
Step #7 - "Build E2E Image": 495d1ae42cb9: Pull complete
Step #7 - "Build E2E Image": 66b6d86e5b33: Pull complete
Step #7 - "Build E2E Image": 90062ecd5dec: Pull complete
Step #7 - "Build E2E Image": Digest: sha256:ad4b34f02e52164df83182a2a05074b5288d6e6bcc2dfa0ce3d6fa43ec8b557f
Step #7 - "Build E2E Image": Status: Downloaded newer image for maven:3.8.7-eclipse-temurin-17-focal
Step #7 - "Build E2E Image":  ---> 896b49b4d0b7
Step #7 - "Build E2E Image": Step 2/12 : RUN apt-get update && apt-get install -y jq  python3.8 python3-pip
Step #4 - "Compile Bunsen and Pipeline": 3337662e6dc9: Pull complete
Step #7 - "Build E2E Image":  ---> Running in cfb7cbd68f97
Step #5 - "Build Uploader Image":  ---> Running in 7d2caa5f6a4c
Step #4 - "Compile Bunsen and Pipeline": 81485058ab89: Pull complete
Step #5 - "Build Uploader Image": Removing intermediate container 7d2caa5f6a4c
Step #5 - "Build Uploader Image":  ---> a6e3d40c3438
Step #5 - "Build Uploader Image": Step 3/10 : COPY  ./ ./
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Pull complete
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Pull complete
Step #4 - "Compile Bunsen and Pipeline": Digest: sha256:3a9c30b3af6278a8ae0007d3a3bf00fff80ec3ed7ae4eb9bfa1772853101549b
Step #4 - "Compile Bunsen and Pipeline": Status: Downloaded newer image for maven:3.8.5-openjdk-17
Step #4 - "Compile Bunsen and Pipeline": docker.io/library/maven:3.8.5-openjdk-17
Step #5 - "Build Uploader Image":  ---> 5ab82cd3071d
Step #5 - "Build Uploader Image": Step 4/10 : RUN pip install -r requirements.txt
Step #5 - "Build Uploader Image":  ---> Running in 841c4ea9eab5
Step #7 - "Build E2E Image": Get:1 http://security.ubuntu.com/ubuntu focal-security InRelease [128 kB]
Step #7 - "Build E2E Image": Get:2 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [33.1 kB]
Step #7 - "Build E2E Image": Get:3 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [4,432 kB]
Step #1 - "Launch Sink Server Search": Creating volume "sink-server-search_hapi-data" with default driver
Step #7 - "Build E2E Image": Get:4 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [1,308 kB]
Step #7 - "Build E2E Image": Get:5 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [4,801 kB]
Step #2 - "Launch Sink Server JDBC": Creating volume "sink-server-jdbc_hapi-data" with default driver
Step #0 - "Launch HAPI Source Server": Creating network "hapi-compose_default" with the default driver
Step #4 - "Compile Bunsen and Pipeline": [INFO] Error stacktraces are turned on.
Step #1 - "Launch Sink Server Search": Pulling sink-server (hapiproject/hapi:latest)...
Step #4 - "Compile Bunsen and Pipeline": [INFO] Scanning for projects...
Step #0 - "Launch HAPI Source Server": Creating volume "hapi-compose_hapi-fhir-db" with default driver
Step #0 - "Launch HAPI Source Server": Creating volume "hapi-compose_hapi-server" with default driver
Step #2 - "Launch Sink Server JDBC": Pulling sink-server (hapiproject/hapi:latest)...
Step #5 - "Build Uploader Image": Collecting google-auth
Step #1 - "Launch Sink Server Search": latest: Pulling from hapiproject/hapi
Step #5 - "Build Uploader Image":   Downloading google_auth-2.45.0-py2.py3-none-any.whl (233 kB)
Step #5 - "Build Uploader Image":      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 233.3/233.3 kB 6.3 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting mock
Step #2 - "Launch Sink Server JDBC": latest: Pulling from hapiproject/hapi
Step #5 - "Build Uploader Image":   Downloading mock-5.2.0-py3-none-any.whl (31 kB)
Step #5 - "Build Uploader Image": Collecting requests
Step #5 - "Build Uploader Image":   Downloading requests-2.31.0-py3-none-any.whl (62 kB)
Step #5 - "Build Uploader Image":      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 10.4 MB/s eta 0:00:00
Step #0 - "Launch HAPI Source Server": Pulling db (postgres:)...
Step #5 - "Build Uploader Image": Collecting cachetools<7.0,>=2.0.0
Step #5 - "Build Uploader Image":   Downloading cachetools-5.5.2-py3-none-any.whl (10 kB)
Step #5 - "Build Uploader Image": Collecting rsa<5,>=3.1.4
Step #5 - "Build Uploader Image":   Downloading rsa-4.9.1-py3-none-any.whl (34 kB)
Step #5 - "Build Uploader Image": Collecting pyasn1-modules>=0.2.1
Step #5 - "Build Uploader Image":   Downloading pyasn1_modules-0.3.0-py2.py3-none-any.whl (181 kB)
Step #5 - "Build Uploader Image":      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 181.3/181.3 kB 26.3 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting certifi>=2017.4.17
Step #5 - "Build Uploader Image":   Downloading certifi-2026.1.4-py3-none-any.whl (152 kB)
Step #5 - "Build Uploader Image":      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 152.9/152.9 kB 19.4 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting urllib3<3,>=1.21.1
Step #5 - "Build Uploader Image":   Downloading urllib3-2.0.7-py3-none-any.whl (124 kB)
Step #5 - "Build Uploader Image":      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 124.2/124.2 kB 14.8 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting idna<4,>=2.5
Step #5 - "Build Uploader Image":   Downloading idna-3.10-py3-none-any.whl (70 kB)
Step #5 - "Build Uploader Image":      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 70.4/70.4 kB 11.6 MB/s eta 0:00:00
Step #0 - "Launch HAPI Source Server": latest: Pulling from library/postgres
Step #5 - "Build Uploader Image": Collecting charset-normalizer<4,>=2
Step #5 - "Build Uploader Image":   Downloading charset_normalizer-3.4.4-py3-none-any.whl (53 kB)
Step #5 - "Build Uploader Image":      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 53.4/53.4 kB 8.6 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting pyasn1<0.6.0,>=0.4.6
Step #5 - "Build Uploader Image":   Downloading pyasn1-0.5.1-py2.py3-none-any.whl (84 kB)
Step #5 - "Build Uploader Image":      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.9/84.9 kB 9.8 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Installing collected packages: urllib3, pyasn1, mock, idna, charset-normalizer, certifi, cachetools, rsa, requests, pyasn1-modules, google-auth
Step #7 - "Build E2E Image": Get:6 http://archive.ubuntu.com/ubuntu focal InRelease [265 kB]
Step #7 - "Build E2E Image": Get:7 http://archive.ubuntu.com/ubuntu focal-updates InRelease [128 kB]
Step #7 - "Build E2E Image": Get:8 http://archive.ubuntu.com/ubuntu focal-backports InRelease [128 kB]
Step #7 - "Build E2E Image": Get:9 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB]
Step #5 - "Build Uploader Image": Successfully installed cachetools-5.5.2 certifi-2026.1.4 charset-normalizer-3.4.4 google-auth-2.45.0 idna-3.10 mock-5.2.0 pyasn1-0.5.1 pyasn1-modules-0.3.0 requests-2.31.0 rsa-4.9.1 urllib3-2.0.7
Step #5 - "Build Uploader Image": �[91mWARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
Step #5 - "Build Uploader Image": �[0m�[91m
Step #5 - "Build Uploader Image": [notice] A new release of pip is available: 23.0.1 -> 24.0
Step #5 - "Build Uploader Image": [notice] To update, run: pip install --upgrade pip
Step #7 - "Build E2E Image": Get:10 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB]
Step #7 - "Build E2E Image": Get:11 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB]
Step #7 - "Build E2E Image": Get:12 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1,275 kB]
Step #7 - "Build E2E Image": Get:13 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1,599 kB]
Step #7 - "Build E2E Image": Get:14 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [4,920 kB]
Step #7 - "Build E2E Image": Get:15 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [36.8 kB]
Step #7 - "Build E2E Image": Get:16 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [4,998 kB]
Step #7 - "Build E2E Image": Get:17 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [55.2 kB]
Step #7 - "Build E2E Image": Get:18 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [28.6 kB]
Step #7 - "Build E2E Image": Fetched 35.7 MB in 6s (5,631 kB/s)
Step #4 - "Compile Bunsen and Pipeline": [INFO] ------------------------------------------------------------------------
Step #4 - "Compile Bunsen and Pipeline": [INFO] Reactor Build Order:
Step #4 - "Compile Bunsen and Pipeline": [INFO] 
Step #4 - "Compile Bunsen and Pipeline": [INFO] root                                                               [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Parent                                                      [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Extension Structure Definitions                                    [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Core                                                        [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Core R4                                                     [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Core Stu3                                                   [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Avro                                                        [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] FHIR Analytics                                                     [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] common                                                             [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] batch                                                              [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] controller                                                         [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] coverage                                                           [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] doc                                                                [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] docker                                                             [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] dwh                                                                [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] e2e-tests                                                          [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] query                                                              [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] synthea-hiv                                                        [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] utils                                                              [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] 
Step #4 - "Compile Bunsen and Pipeline": [INFO] Using the MultiThreadedBuilder implementation with a thread count of 64
Step #4 - "Compile Bunsen and Pipeline": [INFO] 
Step #4 - "Compile Bunsen and Pipeline": [INFO] -------------------< com.google.fhir.analytics:root >-------------------
Step #4 - "Compile Bunsen and Pipeline": [INFO] Building root 0.2.7-SNAPSHOT                                      [1/19]
Step #4 - "Compile Bunsen and Pipeline": [INFO] --------------------------------[ pom ]---------------------------------
Step #7 - "Build E2E Image": Reading package lists...
Step #7 - "Build E2E Image": Reading package lists...
Step #4 - "Compile Bunsen and Pipeline": [INFO] 
Step #4 - "Compile Bunsen and Pipeline": [INFO] --- jacoco-maven-plugin:0.8.14:prepare-agent (default) @ root ---
Step #0 - "Launch HAPI Source Server": Digest: sha256:5773fe724c49c42a7a9ca70202e11e1dff21fb7235b335a73f39297d200b73a2
Step #0 - "Launch HAPI Source Server": Status: Downloaded newer image for postgres:latest
Step #7 - "Build E2E Image": Building dependency tree...
Step #7 - "Build E2E Image": Reading state information...
Step #0 - "Launch HAPI Source Server": Pulling hapi-server (hapiproject/hapi:latest)...
Step #7 - "Build E2E Image": The following additional packages will be installed:
Step #7 - "Build E2E Image":   build-essential cpp cpp-9 dirmngr dpkg-dev fakeroot file g++ g++-9 gcc
Step #7 - "Build E2E Image":   gcc-10-base gcc-9 gcc-9-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent
Step #7 - "Build E2E Image":   gpg-wks-client gpg-wks-server gpgconf gpgsm gpgv libalgorithm-diff-perl
Step #7 - "Build E2E Image":   libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan5 libassuan0
Step #7 - "Build E2E Image":   libatomic1 libc-dev-bin libc6 libc6-dev libcc1-0 libcrypt-dev libdpkg-perl
Step #7 - "Build E2E Image":   libexpat1 libexpat1-dev libfakeroot libfile-fcntllock-perl libgcc-9-dev
Step #7 - "Build E2E Image":   libgcc-s1 libgomp1 libisl22 libitm1 libjq1 libksba8 liblocale-gettext-perl
Step #7 - "Build E2E Image":   liblsan0 libmagic-mgc libmagic1 libmpc3 libmpdec2 libmpfr6 libnpth0 libonig5
Step #7 - "Build E2E Image":   libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
Step #7 - "Build E2E Image":   libpython3.8-minimal libpython3.8-stdlib libquadmath0 libreadline8
Step #7 - "Build E2E Image":   libstdc++-9-dev libstdc++6 libtsan0 libubsan1 linux-libc-dev make manpages
Step #7 - "Build E2E Image":   manpages-dev mime-support pinentry-curses python-pip-whl python3 python3-dev
Step #7 - "Build E2E Image":   python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
Step #7 - "Build E2E Image":   python3-setuptools python3-wheel python3.8-dev python3.8-minimal
Step #7 - "Build E2E Image":   readline-common xz-utils zlib1g-dev
Step #7 - "Build E2E Image": Suggested packages:
Step #7 - "Build E2E Image":   cpp-doc gcc-9-locales dbus-user-session libpam-systemd pinentry-gnome3 tor
Step #7 - "Build E2E Image":   debian-keyring g++-multilib g++-9-multilib gcc-9-doc gcc-multilib autoconf
Step #7 - "Build E2E Image":   automake libtool flex bison gdb gcc-doc gcc-9-multilib parcimonie xloadimage
Step #7 - "Build E2E Image":   scdaemon glibc-doc bzr libstdc++-9-doc make-doc man-browser pinentry-doc
Step #7 - "Build E2E Image":   python3-doc python3-tk python3-venv python-setuptools-doc python3.8-venv
Step #7 - "Build E2E Image":   python3.8-doc binfmt-support readline-doc
Step #7 - "Build E2E Image": The following NEW packages will be installed:
Step #7 - "Build E2E Image":   build-essential cpp cpp-9 dirmngr dpkg-dev fakeroot file g++ g++-9 gcc gcc-9
Step #7 - "Build E2E Image":   gcc-9-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client
Step #7 - "Build E2E Image":   gpg-wks-server gpgconf gpgsm jq libalgorithm-diff-perl
Step #7 - "Build E2E Image":   libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan5 libassuan0
Step #7 - "Build E2E Image":   libatomic1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdpkg-perl
Step #7 - "Build E2E Image":   libexpat1-dev libfakeroot libfile-fcntllock-perl libgcc-9-dev libgomp1
Step #7 - "Build E2E Image":   libisl22 libitm1 libjq1 libksba8 liblocale-gettext-perl liblsan0
Step #7 - "Build E2E Image":   libmagic-mgc libmagic1 libmpc3 libmpdec2 libmpfr6 libnpth0 libonig5
Step #7 - "Build E2E Image":   libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
Step #7 - "Build E2E Image":   libpython3.8-minimal libpython3.8-stdlib libquadmath0 libreadline8
Step #7 - "Build E2E Image":   libstdc++-9-dev libtsan0 libubsan1 linux-libc-dev make manpages manpages-dev
Step #7 - "Build E2E Image":   mime-support pinentry-curses python-pip-whl python3 python3-dev
Step #7 - "Build E2E Image":   python3-distutils python3-lib2to3 python3-minimal python3-pip
Step #7 - "Build E2E Image":   python3-pkg-resources python3-setuptools python3-wheel python3.8
Step #7 - "Build E2E Image":   python3.8-dev python3.8-minimal readline-common xz-utils zlib1g-dev
Step #7 - "Build E2E Image": The following packages will be upgraded:
Step #7 - "Build E2E Image":   gcc-10-base gpgv libc6 libexpat1 libgcc-s1 libstdc++6
Step #7 - "Build E2E Image": 6 upgraded, 84 newly installed, 0 to remove and 80 not upgraded.
Step #7 - "Build E2E Image": Need to get 65.6 MB of archives.
Step #7 - "Build E2E Image": After this operation, 263 MB of additional disk space will be used.
Step #7 - "Build E2E Image": Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gcc-10-base amd64 10.5.0-1ubuntu1~20.04 [20.8 kB]
Step #0 - "Launch HAPI Source Server": latest: Pulling from hapiproject/hapi
Step #7 - "Build E2E Image": Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgcc-s1 amd64 10.5.0-1ubuntu1~20.04 [41.8 kB]
Step #5 - "Build Uploader Image": �[0mRemoving intermediate container 841c4ea9eab5
Step #5 - "Build Uploader Image":  ---> 37afcde987a8
Step #5 - "Build Uploader Image": Step 5/10 : ENV INPUT_DIR="./test_files"
Step #7 - "Build E2E Image": Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libstdc++6 amd64 10.5.0-1ubuntu1~20.04 [501 kB]
Step #7 - "Build E2E Image": Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6 amd64 2.31-0ubuntu9.18 [2,720 kB]
Step #7 - "Build E2E Image": Get:5 http://archive.ubuntu.com/ubuntu focal/main amd64 liblocale-gettext-perl amd64 1.07-4 [17.1 kB]
Step #7 - "Build E2E Image": Get:6 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libpython3.8-minimal amd64 3.8.10-0ubuntu1~20.04.18 [721 kB]
Step #7 - "Build E2E Image": Get:7 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libexpat1 amd64 2.2.9-1ubuntu0.8 [75.6 kB]
Step #7 - "Build E2E Image": Get:8 http://archive.ubuntu.com/ubuntu fo
...
[Logs truncated due to log size limitations. For full logs, see https://storage.cloud.google.com/cloud-build-gh-logs/log-b4832c6a-073d-4fbc-93dc-8cdd0b79735a.txt.]
...
cally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 168.0 in stage 131.0 (TID 2006). 105320 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 172.0 in stage 131.0 (TID 2010)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 173.0 in stage 131.0 (TID 2011) (d5cd441b8de6, executor driver, partition 173, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 164.0 in stage 131.0 (TID 2002) in 6 ms on d5cd441b8de6 (executor driver) (163/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 173.0 in stage 131.0 (TID 2011)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 174.0 in stage 131.0 (TID 2012) (d5cd441b8de6, executor driver, partition 174, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 163.0 in stage 131.0 (TID 2001) in 6 ms on d5cd441b8de6 (executor driver) (164/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 174.0 in stage 131.0 (TID 2012)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 175.0 in stage 131.0 (TID 2013) (d5cd441b8de6, executor driver, partition 175, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 168.0 in stage 131.0 (TID 2006) in 5 ms on d5cd441b8de6 (executor driver) (165/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 175.0 in stage 131.0 (TID 2013)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 162.0 in stage 131.0 (TID 2000) in 8 ms on d5cd441b8de6 (executor driver) (166/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_169 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 165.0 in stage 131.0 (TID 2003). 104942 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 176.0 in stage 131.0 (TID 2014) (d5cd441b8de6, executor driver, partition 176, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 176.0 in stage 131.0 (TID 2014)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 165.0 in stage 131.0 (TID 2003) in 6 ms on d5cd441b8de6 (executor driver) (167/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_170 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 166.0 in stage 131.0 (TID 2004). 104273 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_171 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_173 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 177.0 in stage 131.0 (TID 2015) (d5cd441b8de6, executor driver, partition 177, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 167.0 in stage 131.0 (TID 2005). 107886 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 177.0 in stage 131.0 (TID 2015)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 166.0 in stage 131.0 (TID 2004) in 8 ms on d5cd441b8de6 (executor driver) (168/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 169.0 in stage 131.0 (TID 2007). 104206 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_172 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 178.0 in stage 131.0 (TID 2016) (d5cd441b8de6, executor driver, partition 178, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 178.0 in stage 131.0 (TID 2016)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 179.0 in stage 131.0 (TID 2017) (d5cd441b8de6, executor driver, partition 179, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 167.0 in stage 131.0 (TID 2005) in 8 ms on d5cd441b8de6 (executor driver) (169/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 169.0 in stage 131.0 (TID 2007) in 6 ms on d5cd441b8de6 (executor driver) (170/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_174 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 179.0 in stage 131.0 (TID 2017)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_175 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 171.0 in stage 131.0 (TID 2009). 107110 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 170.0 in stage 131.0 (TID 2008). 115118 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 173.0 in stage 131.0 (TID 2011). 108342 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 180.0 in stage 131.0 (TID 2018) (d5cd441b8de6, executor driver, partition 180, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_176 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 180.0 in stage 131.0 (TID 2018)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 181.0 in stage 131.0 (TID 2019) (d5cd441b8de6, executor driver, partition 181, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 181.0 in stage 131.0 (TID 2019)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 182.0 in stage 131.0 (TID 2020) (d5cd441b8de6, executor driver, partition 182, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 172.0 in stage 131.0 (TID 2010). 107348 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 182.0 in stage 131.0 (TID 2020)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 171.0 in stage 131.0 (TID 2009) in 6 ms on d5cd441b8de6 (executor driver) (171/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 183.0 in stage 131.0 (TID 2021) (d5cd441b8de6, executor driver, partition 183, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 174.0 in stage 131.0 (TID 2012). 112785 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 173.0 in stage 131.0 (TID 2011) in 5 ms on d5cd441b8de6 (executor driver) (172/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 183.0 in stage 131.0 (TID 2021)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 175.0 in stage 131.0 (TID 2013). 100477 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 170.0 in stage 131.0 (TID 2008) in 8 ms on d5cd441b8de6 (executor driver) (173/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 184.0 in stage 131.0 (TID 2022) (d5cd441b8de6, executor driver, partition 184, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 184.0 in stage 131.0 (TID 2022)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_177 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 185.0 in stage 131.0 (TID 2023) (d5cd441b8de6, executor driver, partition 185, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 176.0 in stage 131.0 (TID 2014). 101955 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 172.0 in stage 131.0 (TID 2010) in 6 ms on d5cd441b8de6 (executor driver) (174/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 175.0 in stage 131.0 (TID 2013) in 6 ms on d5cd441b8de6 (executor driver) (175/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 185.0 in stage 131.0 (TID 2023)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_178 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 186.0 in stage 131.0 (TID 2024) (d5cd441b8de6, executor driver, partition 186, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 174.0 in stage 131.0 (TID 2012) in 7 ms on d5cd441b8de6 (executor driver) (176/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 186.0 in stage 131.0 (TID 2024)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 176.0 in stage 131.0 (TID 2014) in 6 ms on d5cd441b8de6 (executor driver) (177/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_180 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_179 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 177.0 in stage 131.0 (TID 2015). 104632 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_182 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 180.0 in stage 131.0 (TID 2018). 100244 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_183 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 178.0 in stage 131.0 (TID 2016). 102034 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 187.0 in stage 131.0 (TID 2025) (d5cd441b8de6, executor driver, partition 187, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 187.0 in stage 131.0 (TID 2025)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 188.0 in stage 131.0 (TID 2026) (d5cd441b8de6, executor driver, partition 188, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_184 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 177.0 in stage 131.0 (TID 2015) in 7 ms on d5cd441b8de6 (executor driver) (178/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_181 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 188.0 in stage 131.0 (TID 2026)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 189.0 in stage 131.0 (TID 2027) (d5cd441b8de6, executor driver, partition 189, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 189.0 in stage 131.0 (TID 2027)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 178.0 in stage 131.0 (TID 2016) in 11 ms on d5cd441b8de6 (executor driver) (179/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 180.0 in stage 131.0 (TID 2018) in 10 ms on d5cd441b8de6 (executor driver) (180/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 179.0 in stage 131.0 (TID 2017). 108597 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_186 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 190.0 in stage 131.0 (TID 2028) (d5cd441b8de6, executor driver, partition 190, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_185 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 182.0 in stage 131.0 (TID 2020). 110461 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 190.0 in stage 131.0 (TID 2028)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 183.0 in stage 131.0 (TID 2021). 104441 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 191.0 in stage 131.0 (TID 2029) (d5cd441b8de6, executor driver, partition 191, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 191.0 in stage 131.0 (TID 2029)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 192.0 in stage 131.0 (TID 2030) (d5cd441b8de6, executor driver, partition 192, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 179.0 in stage 131.0 (TID 2017) in 13 ms on d5cd441b8de6 (executor driver) (181/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 192.0 in stage 131.0 (TID 2030)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 183.0 in stage 131.0 (TID 2021) in 11 ms on d5cd441b8de6 (executor driver) (182/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_188 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 182.0 in stage 131.0 (TID 2020) in 11 ms on d5cd441b8de6 (executor driver) (183/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 181.0 in stage 131.0 (TID 2019). 109064 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_187 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 184.0 in stage 131.0 (TID 2022). 104461 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 193.0 in stage 131.0 (TID 2031) (d5cd441b8de6, executor driver, partition 193, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 194.0 in stage 131.0 (TID 2032) (d5cd441b8de6, executor driver, partition 194, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 193.0 in stage 131.0 (TID 2031)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 194.0 in stage 131.0 (TID 2032)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 181.0 in stage 131.0 (TID 2019) in 13 ms on d5cd441b8de6 (executor driver) (184/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 184.0 in stage 131.0 (TID 2022) in 12 ms on d5cd441b8de6 (executor driver) (185/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 185.0 in stage 131.0 (TID 2023). 111194 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 186.0 in stage 131.0 (TID 2024). 110965 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 195.0 in stage 131.0 (TID 2033) (d5cd441b8de6, executor driver, partition 195, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 195.0 in stage 131.0 (TID 2033)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 196.0 in stage 131.0 (TID 2034) (d5cd441b8de6, executor driver, partition 196, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_189 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 185.0 in stage 131.0 (TID 2023) in 12 ms on d5cd441b8de6 (executor driver) (186/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 196.0 in stage 131.0 (TID 2034)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 186.0 in stage 131.0 (TID 2024) in 12 ms on d5cd441b8de6 (executor driver) (187/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 188.0 in stage 131.0 (TID 2026). 104974 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 187.0 in stage 131.0 (TID 2025). 105450 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_190 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 197.0 in stage 131.0 (TID 2035) (d5cd441b8de6, executor driver, partition 197, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 197.0 in stage 131.0 (TID 2035)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 198.0 in stage 131.0 (TID 2036) (d5cd441b8de6, executor driver, partition 198, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 198.0 in stage 131.0 (TID 2036)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 188.0 in stage 131.0 (TID 2026) in 10 ms on d5cd441b8de6 (executor driver) (188/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 187.0 in stage 131.0 (TID 2025) in 11 ms on d5cd441b8de6 (executor driver) (189/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_191 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_194 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_192 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 190.0 in stage 131.0 (TID 2028). 104328 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_193 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 189.0 in stage 131.0 (TID 2027). 104437 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Starting task 199.0 in stage 131.0 (TID 2037) (d5cd441b8de6, executor driver, partition 199, PROCESS_LOCAL, 8999 bytes) 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_196 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_195 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Running task 199.0 in stage 131.0 (TID 2037)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_198 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_197 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 190.0 in stage 131.0 (TID 2028) in 11 ms on d5cd441b8de6 (executor driver) (190/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 189.0 in stage 131.0 (TID 2027) in 12 ms on d5cd441b8de6 (executor driver) (191/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 191.0 in stage 131.0 (TID 2029). 106047 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 194.0 in stage 131.0 (TID 2032). 109571 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 191.0 in stage 131.0 (TID 2029) in 11 ms on d5cd441b8de6 (executor driver) (192/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 193.0 in stage 131.0 (TID 2031). 110465 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 198.0 in stage 131.0 (TID 2036). 101918 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 195.0 in stage 131.0 (TID 2033). 113103 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 194.0 in stage 131.0 (TID 2032) in 11 ms on d5cd441b8de6 (executor driver) (193/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 198.0 in stage 131.0 (TID 2036) in 9 ms on d5cd441b8de6 (executor driver) (194/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 195.0 in stage 131.0 (TID 2033) in 10 ms on d5cd441b8de6 (executor driver) (195/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 192.0 in stage 131.0 (TID 2030). 110763 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 193.0 in stage 131.0 (TID 2031) in 11 ms on d5cd441b8de6 (executor driver) (196/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 196.0 in stage 131.0 (TID 2034). 110832 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 197.0 in stage 131.0 (TID 2035). 110462 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 196.0 in stage 131.0 (TID 2034) in 11 ms on d5cd441b8de6 (executor driver) (197/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 197.0 in stage 131.0 (TID 2035) in 10 ms on d5cd441b8de6 (executor driver) (198/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 192.0 in stage 131.0 (TID 2030) in 13 ms on d5cd441b8de6 (executor driver) (199/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO BlockManager: Found block rdd_211_199 locally
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO Executor: Finished task 199.0 in stage 131.0 (TID 2037). 102425 bytes result sent to driver
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSetManager: Finished task 199.0 in stage 131.0 (TID 2037) in 10 ms on d5cd441b8de6 (executor driver) (200/200)
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSchedulerImpl: Removed TaskSet 131.0, whose tasks have all completed, from pool 
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO DAGScheduler: ResultStage 131 (toPandas at /workspace/dwh/query_lib_spark.py:131) finished in 0.163 s
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO DAGScheduler: Job 85 is finished. Cancelling potential speculative or zombie tasks for this job
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO TaskSchedulerImpl: Killing all running tasks in stage 131: Stage finished
Step #35 - "Test Indicators": 26/01/26 08:03:58 INFO DAGScheduler: Job 85 finished: toPandas at /workspace/dwh/query_lib_spark.py:131, took 0.165749 s
Step #35 - "Test Indicators": 26/01/26 08:03:59 INFO BlockManagerInfo: Removed broadcast_133_piece0 on d5cd441b8de6:42533 in memory (size: 35.9 KiB, free: 348.7 MiB)
Step #35 - "Test Indicators": [INDICATORS_LOG 2026-01-26 08:03:59.883086] patient_obs_view size= 150109
Step #35 - "Test Indicators": [INDICATORS_LOG 2026-01-26 08:04:01.850580] Number of rows in TX_TB temp_df= 6404
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO SparkContext: Invoking stop() from shutdown hook
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO SparkContext: SparkContext is stopping with exitCode 0.
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO SparkUI: Stopped Spark web UI at http://d5cd441b8de6:4040
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO MemoryStore: MemoryStore cleared
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO BlockManager: BlockManager stopped
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO BlockManagerMaster: BlockManagerMaster stopped
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO SparkContext: Successfully stopped SparkContext
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO ShutdownHookManager: Shutdown hook called
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO ShutdownHookManager: Deleting directory /tmp/spark-23471bac-08b3-4b07-a94c-c95932517a2a
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO ShutdownHookManager: Deleting directory /tmp/spark-3d0ff3d8-9eca-447b-80e4-145e031c9528/pyspark-15fa5107-237b-46c6-81bb-cdd0bc98671c
Step #35 - "Test Indicators": 26/01/26 08:04:02 INFO ShutdownHookManager: Deleting directory /tmp/spark-3d0ff3d8-9eca-447b-80e4-145e031c9528
Step #35 - "Test Indicators": Suppressed, non-suppressed, none, male_25 numbers are : 8,752,0,2
Step #35 - "Test Indicators": Suppressed, non-suppressed, none, male_25 ratios are : 0.0105,0.989,0,0.00263
Step #35 - "Test Indicators": TX_NEW, non-TX_NEW, none, male_25 numbers are : 95,439,0,24
Step #35 - "Test Indicators": TX_NEW, non-TX_NEW, none, male_25 ratios are : 0.178,0.822,0,0.0449
Step #35 - "Test Indicators": TB_STAT, non-TB_STAT, none, male_25 numbers are : 86,448,0,29
Step #35 - "Test Indicators": TB_STAT, non-TB_STAT, none, male_25 ratios are : 0.161,0.839,0,0.0543
Step #35 - "Test Indicators": TX_CURR, non-TX_CURR, none, male_25 numbers are : 116,418,0,29
Step #35 - "Test Indicators": TX_CURR, non-TX_CURR, none, male_25 ratios are : 0.217,0.783,0,0.0543
Step #35 - "Test Indicators": TB_ART, non-TB_ART, none, male_25 numbers are : 43,491,0,13
Step #35 - "Test Indicators": TB_ART, non-TB_ART, none, male_25 ratios are : 0.0805,0.919,0,0.0243
Step #35 - "Test Indicators": TB_PREV, non-TB_PREV, none, male_25 numbers are : 57,6.35e+03,0,8
Step #35 - "Test Indicators": TB_PREV, non-TB_PREV, none, male_25 ratios are : 0.0089,0.991,0,0.00125
Step #35 - "Test Indicators": TX_TB, non-TX_TB, none, male_25 numbers are : 0,6.4e+03,0,0
Step #35 - "Test Indicators": TX_TB, non-TX_TB, none, male_25 ratios are : 0,1,0,0
Step #35 - "Test Indicators": SUCCESS!
Finished Step #35 - "Test Indicators"
Starting Step #36 - "Turn down Webserver and HAPI Server"
Step #36 - "Turn down Webserver and HAPI Server": Already have image (with digest): docker/compose
Step #36 - "Turn down Webserver and HAPI Server": Stopping openmrs                 ... 
Step #36 - "Turn down Webserver and HAPI Server": Stopping sink-server-for-openmrs ... 
Step #36 - "Turn down Webserver and HAPI Server": Stopping openmrs-fhir-mysql      ... 
Step #36 - "Turn down Webserver and HAPI Server": �[2A�[2K
Stopping sink-server-for-openmrs ... �[32mdone�[0m
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�[1BRemoving openmrs                 ... 
Step #36 - "Turn down Webserver and HAPI Server": Removing sink-server-for-openmrs ... 
Step #36 - "Turn down Webserver and HAPI Server": Removing openmrs-fhir-mysql      ... 
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�[3BNetwork cloudbuild is external, skipping
Finished Step #36 - "Turn down Webserver and HAPI Server"
PUSH
Pushing us-docker.pkg.dev/cloud-build-fhir/fhir-analytics/batch-pipeline:2864c86
The push refers to repository [us-docker.pkg.dev/cloud-build-fhir/fhir-analytics/batch-pipeline]
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Pushing us-docker.pkg.dev/cloud-build-fhir/fhir-analytics/e2e-tests:2864c86
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Pushing us-docker.pkg.dev/cloud-build-fhir/fhir-analytics/synthea-uploader:2864c86
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DONE
Step #1 - "Launch Sink Server Search": �[1A�[2K
Creating sink-server-search ... �[32mdone�[0m
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Step #0 - "Launch HAPI Source Server": �[2A�[2K
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Step #2 - "Launch Sink Server JDBC": �[1A�[2K
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Step #19 - "Bring up controller and Spark containers": �[1A�[2K
Creating pipeline-controller ... �[32mdone�[0m
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Step #28 - "Launch OpenMRS Server and HAPI FHIR Sink Server for OpenMRS": �[1A�[2K
Creating openmrs                 ... �[32mdone�[0m
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Step #22 - "Launch HAPI FHIR Sink Server": �[1A�[2K
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Step #23 - "Bring up the pipeline controller for FHIR server to FHIR server sync": �[1A�[2K
Creating pipeline-controller ... �[32mdone�[0m
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