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nextflow-ize caveman and related tools from cgp-wgs

@rlancaster96 rlancaster96 self-assigned this Jun 28, 2024
@rlancaster96 rlancaster96 linked an issue Jun 28, 2024 that may be closed by this pull request
@rlancaster96 rlancaster96 changed the title caveman tool caveman tool [WIP] Jun 28, 2024
@rlancaster96 rlancaster96 added this to the Evotypes 1 milestone Jul 31, 2024
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Add Caveman to variant calling pipeline

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