Releases · ohsu-comp-bio/embedding-kit

What's Changed

Add cli support for embkit by @Exitare in #1
Create new preprocessing module by @Exitare in #2
Consolidate VAEs to use base class by @Exitare in #3
Add unit tests for decoder, encoder and layers by @Exitare in #4
Implement pairwise comparison layer by @Exitare in #5
Add github workflow to release a new package based on a new Github Re… by @Exitare in #6
Add test coverage action by @Exitare in #8
Update pr action to deal with forked PRs by @Exitare in #9
Add c-bio commands by @Exitare in #10
Rename study name to study id by @Exitare in #11
Update test_c_bio.py by @Exitare in #12
Create pytorch.py by @briankarlberg in #13
Add improved return value for unpack function by @Exitare in #14
Add docs for cbio commands by @Exitare in #16
GTEx embedding example by @kellrott in #15
Update loss function documentation by @Exitare in #20
Add dynamic loss function for VAE by @Exitare in #22
Distance metrics by @jordan2lee in #21
Move distance calculations to a separate module by @Exitare in #23
Update docs by @Exitare in #24
Add ability to directly pass dataloader class to load/download datasets by @Exitare in #25
Fix missing file update for data loader by @Exitare in #26
Create tsp layer & docs by @Exitare in #27
Hla2vec by @Exitare in #29
feat: add datasets command by @Exitare in #31
feat: add new hugo download command by @Exitare in #32
[WIP] Adding more constrain options to NetVAE elements by @kellrott in #30
feat: move open_model to a class method. by @Exitare in #34
add SIF dataset command by @Exitare in #35
fix: change gtex example from bce loss to mse loss by @Exitare in #36
fix: net van missing constraints by @Exitare in #37
VAE alignment by @kellrott in #38
RNA VAE by @Exitare in #39
[WIP] hla2vec by @kellrott in #33
feat: utility functions for hla experiment support by @Exitare in #40

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