This is a digital textbook that tries to explain the theory and practice behind using the OME-Zarr data format for big bioimaging data. Click here to access the book.
Feedback is very welcome, by opening an issue on our GitHub issue tracker.
This book is built using Jupyter Book.
To develop the book, it's recommended to use uv.
Run uv run jupyter lab to start Jupyter, and then navigate to the book directory.
Then right-click on one of the chapter's .md files and select "Open With" > "Jupytext Notebook".
All cells can be edited / run directly in this interface.
To build the book locally run:
cd book
jupyter book start --executeThis command will print a link that can be opened in a web browser to preview the book locally.
The creation of this project was funded by the OSCARS project, which received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751.
