Skip to content

Adding support for custom user label #229

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 2 commits into
base: develop
Choose a base branch
from
Open

Adding support for custom user label #229

Changes from 1 commit
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
5b5dfc9
Adding support for custom user label
Rdornier Nov 13, 2025
ff915a0
adding support to add a different label for each image
Rdornier Nov 19, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
24 changes: 16 additions & 8 deletions omero/figure_scripts/Split_View_Figure.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -368,7 +368,7 @@ def make_split_view_figure(conn, pixel_ids, z_start, z_end, split_indexes,
fontsize = 16

spacer = (width // 25) + 2
text_gap = 3 # gap between text and image panels
text_gap = 20 # gap between text and image panels
left_text_width = 0
text_height = 0

Expand Down Expand Up @@ -512,6 +512,10 @@ def get_datasets(name, tags_list, pd_list):
def get_tags(name, tags_list, pd_list):
return [t for t in tags_list]
get_labels = get_tags
elif script_params["Image_Labels"] == "Custom":
def get_custom_label(name, tags_list, pd_list):
return [script_params["Custom_Label"]]
get_labels = get_custom_label
else:
get_labels = get_image_names

Expand Down Expand Up @@ -674,7 +678,7 @@ def run_script():
"""

data_types = [rstring('Image')]
labels = [rstring('Image Name'), rstring('Datasets'), rstring('Tags')]
labels = [rstring('Image Name'), rstring('Datasets'), rstring('Tags'), rstring('Custom')]
algorithms = [rstring('Maximum Intensity'), rstring('Mean Intensity')]
formats = [rstring('JPEG'), rstring('PNG'), rstring('TIFF')]
ckeys = list(COLOURS.keys())
Expand Down Expand Up @@ -750,31 +754,35 @@ def run_script():
description="Label images with Image name (default) or datasets"
" or tags", values=labels, default='Image Name'),

scripts.String(
"Custom_Label", grouping="93",
description="User defined label", default=''),

scripts.Int(
"Stepping", grouping="93",
"Stepping", grouping="94",
description="The Z increment for projection.", default=1, min=1),

scripts.Int(
"Scalebar", grouping="94",
"Scalebar", grouping="95",
description="Scale bar size in microns. Only shown if image has"
" pixel-size info.", min=1),

scripts.String(
"Format", grouping="95",
"Format", grouping="96",
description="Format to save image", values=formats,
default='JPEG'),

scripts.String(
"Figure_Name", grouping="96",
"Figure_Name", grouping="97",
description="File name of the figure to save.",
default='Split_View_Figure'),

scripts.String(
"Overlay_Colour", grouping="97",
"Overlay_Colour", grouping="98",
description="The color of the scale bar.",
default='White', values=o_colours),

version="4.3.0",
version="4.4.0",
authors=["William Moore", "OME Team"],
institutions=["University of Dundee"],
contact="[email protected]",
Expand Down