[Access] Refactor the collection indexing and syncing

cmd/access/node_builder/access_node_builder.go

@@ -2215,6 +2215,7 @@ func (builder *FlowAccessNodeBuilder) Build() (cmd.Node, error) {
 
 			collectionIndexer, err := collections.NewIndexer(
 				node.Logger,
+				builder.ProtocolDB,
 				notNil(builder.collectionExecutedMetric),
 				node.State,
 				node.Storage.Blocks,
@@ -2233,6 +2234,7 @@ func (builder *FlowAccessNodeBuilder) Build() (cmd.Node, error) {
 			var executionDataSyncer *collections.ExecutionDataSyncer
 			if builder.executionDataSyncEnabled && !builder.executionDataIndexingEnabled {
 				executionDataSyncer = collections.NewExecutionDataSyncer(
+					node.Logger,
 					notNil(builder.ExecutionDataCache),
 					collectionIndexer,
 				)

cmd/observer/node_builder/observer_builder.go

@@ -1454,6 +1454,7 @@ func (builder *ObserverServiceBuilder) BuildExecutionSyncComponents() *ObserverS
 			var collectionExecutedMetric module.CollectionExecutedMetric = metrics.NewNoopCollector()
 			collectionIndexer, err := collections.NewIndexer(
 				builder.Logger,
+				builder.ProtocolDB,
 				collectionExecutedMetric,
 				builder.State,
 				builder.Storage.Blocks,

engine/access/ingestion/collections/indexer.go

@@ -34,17 +34,18 @@ type CollectionIndexer interface {
 	// This method is non-blocking.
 	OnCollectionReceived(collection *flow.Collection)
 
+	// IndexCollections indexes a set of collections, skipping any collections which already exist in storage.
+	// Calling this method multiple times with the same collections is a no-op.
+	//
+	// No error returns are expected during normal operation.
+	IndexCollections(collections []*flow.Collection) error
+
 	// MissingCollectionsAtHeight returns all collections that are not present in storage for a specific
 	// finalized block height.
 	//
 	// Expected error returns during normal operation:
 	//   - [storage.ErrNotFound]: if provided block height is not finalized or below this node's root block
 	MissingCollectionsAtHeight(height uint64) ([]*flow.CollectionGuarantee, error)
-
-	// IsCollectionInStorage checks whether the given collection is present in local storage.
-	//
-	// No error returns are expected during normal operation.
-	IsCollectionInStorage(collectionID flow.Identifier) (bool, error)
 }
 
 // Indexer stores and indexes collections received from the network. It is designed to be the central
@@ -56,10 +57,11 @@ type CollectionIndexer interface {
 // The indexer also maintains the last full block height state, which is the highest block height
 // for which all collections are stored and indexed.
 type Indexer struct {
-	log         zerolog.Logger
-	metrics     module.CollectionExecutedMetric
-	lockManager lockctx.Manager
+	log     zerolog.Logger
+	metrics module.CollectionExecutedMetric
 
+	db                  storage.DB
+	lockManager         lockctx.Manager
 	state               protocol.State
 	blocks              storage.Blocks
 	collections         storage.Collections
@@ -74,6 +76,7 @@ type Indexer struct {
 // No error returns are expected during normal operation.
 func NewIndexer(
 	log zerolog.Logger,
+	db storage.DB,
 	metrics module.CollectionExecutedMetric,
 	state protocol.State,
 	blocks storage.Blocks,
@@ -91,6 +94,7 @@ func NewIndexer(
 	return &Indexer{
 		log:                        log.With().Str("component", "collection-indexer").Logger(),
 		metrics:                    metrics,
+		db:                         db,
 		lockManager:                lockManager,
 		state:                      state,
 		blocks:                     blocks,
@@ -136,7 +140,7 @@ func (ci *Indexer) WorkerLoop(ctx irrecoverable.SignalerContext, ready component
 					return
 				}
 
-				if err := ci.indexCollection(collection); err != nil {
+				if err := ci.IndexCollections([]*flow.Collection{collection}); err != nil {
 					ctx.Throw(fmt.Errorf("error indexing collection: %w", err))
 					return
 				}
@@ -158,42 +162,48 @@ func (ci *Indexer) OnCollectionReceived(collection *flow.Collection) {
 	ci.pendingCollectionsNotifier.Notify()
 }
 
-// indexCollection indexes a collection and its transactions.
-// Skips indexing and returns without an error if the collection is already indexed.
+// IndexCollections indexes a set of collections, skipping any collections which already exist in storage.
+// Calling this method multiple times with the same collections is a no-op.
 //
 // No error returns are expected during normal operation.
-func (ci *Indexer) indexCollection(collection *flow.Collection) error {
+func (ci *Indexer) IndexCollections(collections []*flow.Collection) error {
 	// skip indexing if collection is already indexed. on the common path, collections may be received
 	// via multiple subsystems (e.g. execution data sync, collection sync, execution state indexer).
 	// In this case, the indexer will be notified multiple times for the same collection. Only the
 	// first notification should be processed.
 	//
 	// It's OK that this check is not done atomically with the index operation since the collections
 	// storage module is solely responsible for enforcing consistency (even if this is a stale read).
-	exists, err := ci.IsCollectionInStorage(collection.ID())
-	if err != nil {
-		return fmt.Errorf("failed to check if collection is in storage: %w", err)
-	}
-	if exists {
-		return nil
+	newCollections := make([]*flow.Collection, 0)
+	for _, collection := range collections {
+		exists, err := ci.isCollectionInStorage(collection.ID())
+		if err != nil {
+			return fmt.Errorf("failed to check if collection is in storage: %w", err)
+		}
+		if !exists {
+			newCollections = append(newCollections, collection)
+		}
 	}
 
-	lctx := ci.lockManager.NewContext()
-	defer lctx.Release()
-	err = lctx.AcquireLock(storage.LockInsertCollection)
-	if err != nil {
-		return fmt.Errorf("could not acquire lock for indexing collections: %w", err)
+	if len(newCollections) == 0 {
+		return nil
 	}
 
-	// store the collection, including constituent transactions, and index transactionID -> collectionID
-	light, err := ci.collections.StoreAndIndexByTransaction(lctx, collection)
-	if err != nil {
-		return fmt.Errorf("failed to store collection: %w", err)
-	}
+	return storage.WithLock(ci.lockManager, storage.LockInsertCollection, func(lctx lockctx.Context) error {
+		return ci.db.WithReaderBatchWriter(func(rw storage.ReaderBatchWriter) error {
+			for _, collection := range newCollections {
+				// store the collection, including constituent transactions, and index transactionID -> collectionID
+				light, err := ci.collections.BatchStoreAndIndexByTransaction(lctx, collection, rw)
+				if err != nil {
+					return fmt.Errorf("failed to store collection: %w", err)
+				}
 
-	ci.metrics.CollectionFinalized(light)
-	ci.metrics.CollectionExecuted(light)
-	return nil
+				ci.metrics.CollectionFinalized(light)
+				ci.metrics.CollectionExecuted(light)
+			}
+			return nil
+		})
+	})
 }
 
 // updateLastFullBlockHeight updates the LastFullBlockHeight index (if it has changed).
@@ -254,7 +264,7 @@ func (ci *Indexer) MissingCollectionsAtHeight(height uint64) ([]*flow.Collection
 
 	var missingCollections []*flow.CollectionGuarantee
 	for _, guarantee := range block.Payload.Guarantees {
-		inStorage, err := ci.IsCollectionInStorage(guarantee.CollectionID)
+		inStorage, err := ci.isCollectionInStorage(guarantee.CollectionID)
 		if err != nil {
 			return nil, err
 		}
@@ -267,10 +277,10 @@ func (ci *Indexer) MissingCollectionsAtHeight(height uint64) ([]*flow.Collection
 	return missingCollections, nil
 }
 
-// IsCollectionInStorage checks whether the given collection is present in local storage.
+// isCollectionInStorage checks whether the given collection is present in local storage.
 //
 // No error returns are expected during normal operation.
-func (ci *Indexer) IsCollectionInStorage(collectionID flow.Identifier) (bool, error) {
+func (ci *Indexer) isCollectionInStorage(collectionID flow.Identifier) (bool, error) {
 	_, err := ci.collections.LightByID(collectionID)
 	if err == nil {
 		return true, nil

engine/access/ingestion/collections/indexer_test.go

@@ -33,6 +33,7 @@ import (
 type IndexerSuite struct {
 	suite.Suite
 
+	db                  *storagemock.DB
 	state               *protocolmock.State
 	blocks              *storagemock.Blocks
 	collections         *storagemock.Collections
@@ -49,6 +50,7 @@ func TestIndexer(t *testing.T) {
 }
 
 func (s *IndexerSuite) SetupTest() {
+	s.db = storagemock.NewDB(s.T())
 	s.state = protocolmock.NewState(s.T())
 	s.blocks = storagemock.NewBlocks(s.T())
 	s.collections = storagemock.NewCollections(s.T())
@@ -67,6 +69,7 @@ func (s *IndexerSuite) SetupTest() {
 func (s *IndexerSuite) createIndexer(t *testing.T) *Indexer {
 	indexer, err := NewIndexer(
 		unittest.Logger(),
+		s.db,
 		metrics.NewNoopCollector(),
 		s.state,
 		s.blocks,
@@ -183,7 +186,7 @@ func (s *IndexerSuite) TestIsCollectionInStorage() {
 
 		indexer := s.createIndexer(s.T())
 
-		inStorage, err := indexer.IsCollectionInStorage(collection.ID())
+		inStorage, err := indexer.isCollectionInStorage(collection.ID())
 		s.Require().NoError(err)
 		s.Require().True(inStorage)
 	})
@@ -193,7 +196,7 @@ func (s *IndexerSuite) TestIsCollectionInStorage() {
 
 		indexer := s.createIndexer(s.T())
 
-		inStorage, err := indexer.IsCollectionInStorage(collection.ID())
+		inStorage, err := indexer.isCollectionInStorage(collection.ID())
 		s.Require().NoError(err)
 		s.Require().False(inStorage)
 	})
@@ -204,7 +207,7 @@ func (s *IndexerSuite) TestIsCollectionInStorage() {
 
 		indexer := s.createIndexer(s.T())
 
-		inStorage, err := indexer.IsCollectionInStorage(collection.ID())
+		inStorage, err := indexer.isCollectionInStorage(collection.ID())
 		s.Require().ErrorIs(err, exception)
 		s.Require().False(inStorage)
 	})
@@ -268,7 +271,11 @@ func (s *IndexerSuite) TestOnCollectionReceived() {
 
 	synctest.Test(s.T(), func(t *testing.T) {
 		s.collections.On("LightByID", collection.ID()).Return(nil, storage.ErrNotFound).Once()
-		s.collections.On("StoreAndIndexByTransaction", mock.Anything, collection).Return(collection.Light(), nil).Once()
+		s.collections.On("BatchStoreAndIndexByTransaction", mock.Anything, collection, mock.Anything).Return(collection.Light(), nil).Once()
+
+		s.db.On("WithReaderBatchWriter", mock.Anything).Return(func(fn func(storage.ReaderBatchWriter) error) error {
+			return fn(nil)
+		}).Once()
 
 		indexer := s.createIndexer(s.T())
 
@@ -312,6 +319,7 @@ func (s *IndexerSuite) TestWorkerProcessing_ProcessesCollections() {
 
 		indexer, err := NewIndexer(
 			unittest.Logger(),
+			bc.db,
 			metrics.NewNoopCollector(),
 			bc.state,
 			bc.all.Blocks,