v0.15.1

What's Changed

• Implements decision strategies by @ConnectedSystems in #1019
• Fix single reef load and sampling by @Zapiano in #1023
• Bump project version prior to new release by @Zapiano in #1024

Full Changelog: v0.15.0...v0.15.1

v0.15.0

ADRIA v0.15.0

Diff since v0.14.1

What's Changed

• Refactor Reef Index Metrics by @DanTanAtAims in #982
• Dependencies updated and compat restricted for YAXArrays to v0.6

Full Changelog: v0.14.1...v0.15.0

v0.14.1

ADRIA v0.14.1

Diff since v0.14.0

What's Changed

• Pin YAXArray dependency by @ConnectedSystems in #1013

Full Changelog: v0.14.0...v0.1.14.1

Merged pull requests:

• Pin YAXArray dependency (#1013) (@ConnectedSystems)

Closed issues:

• Release v0.14.0 (#1012)

v0.14.0

ADRIA v0.14.0

Diff since v0.13.0

What's Changed

• fix: Correct growth constraint calculation in scenario.jl by @DanTanAtAims in #992
• Refactor out recruitment constraint from timestep loop by @Zapiano in #996
• CompatHelper: bump compat for SIRUS to 3, (keep existing compat) by @github-actions[bot] in #994
• CompatHelper: bump compat for MLJ to 0.22, (keep existing compat) by @github-actions[bot] in #993
• Remove MAT dependency by @ConnectedSystems in #997
• Remove broadcasting to avoid intermediate allocations by @ConnectedSystems in #999
• Update GeoDataFrame handling by @ConnectedSystems in #998
• Remove intermediate array by @ConnectedSystems in #1000
• fix: fix input type declaration for _render_legend by @DanTanAtAims in #1001
• Support arbitrary number of time series clusters by @ConnectedSystems in #1003
• Reorganizing code structure by @ConnectedSystems in #1004
• Bump actions/checkout from 5 to 6 by @dependabot[bot] in #1005
• Initial cleanup in prep for restructure by @ConnectedSystems in #1002
• Adjusted scenario sampling and default parameters by @ConnectedSystems in #1006
• Fix incorrect use of single reef idx by @DanTanAtAims in #1009
• Speedups by @DanTanAtAims in #1008
• fix: Fix categorical bug where bounds are passed instead of categories by @DanTanAtAims in #1010
• Improves scenario assessment workflow by @ConnectedSystems in #1011

Full Changelog: v0.13.0...v0.14.0

Merged pull requests:

• fix: Correct growth constraint calculation in scenario.jl (#992) (@DanTanAtAims)
• CompatHelper: bump compat for MLJ to 0.22, (keep existing compat) (#993) (@github-actions[bot])
• CompatHelper: bump compat for SIRUS to 3, (keep existing compat) (#994) (@github-actions[bot])
• Refactor out recruitment constraint from timestep loop (#996) (@Zapiano)
• Remove MAT dependency (#997) (@ConnectedSystems)
• Update GeoDataFrame handling (#998) (@ConnectedSystems)
• Remove broadcasting to avoid intermediate allocations (#999) (@ConnectedSystems)
• Remove intermediate array (#1000) (@ConnectedSystems)
• fix: fix input type declaration for _render_legend (#1001) (@DanTanAtAims)
• Initial cleanup in prep for restructure (#1002) (@ConnectedSystems)
• Support arbitrary number of time series clusters (#1003) (@ConnectedSystems)
• Reorganizing code structure (#1004) (@ConnectedSystems)
• Bump actions/checkout from 5 to 6 (#1005) (@dependabot[bot])
• Adjusted scenario sampling and default parameters (#1006) (@ConnectedSystems)
• Speedups (#1008) (@DanTanAtAims)
• Fix incorrect use of single reef idx (#1009) (@DanTanAtAims)
• fix: Fix categorical bug where bounds are passed instead of categories (#1010) (@DanTanAtAims)
• Improves scenario assessment workflow (#1011) (@ConnectedSystems)

Closed issues:

• Investigate alternate chunking strategy for Zarr store (#851)
• NaNs in growth_constraints vector raising error at global_calib branch (#963)
• Register v0.13.0 (#991)

v0.13.0

What's Changed

• Calibration and SA changes by @Zapiano in #967
• Fix conn data load location selection when force_single_reef is true by @Zapiano in #970
• Deactivate criteria factors when running deactivate_interventions by @Zapiano in #973
• Update compatible datapackage version to 0.8.0 by @Zapiano in #972
• Fix _init_cover_weights dicstring by @Zapiano in #974
• Specify timeframe when loading RME dhw_scens by @Zapiano in #975
• Doc guided sampling by @Zapiano in #977
• Export bin_edges by @Zapiano in #983
• Update calibrated parameter base values by @Zapiano in #985
• CompatHelper: bump compat for JMcDM to 0.8, (keep existing compat) by @github-actions[bot] in #946
• CompatHelper: bump compat for GraphMakie in [weakdeps] to 0.6, (keep existing compat) by @github-actions[bot] in #964
• CompatHelper: bump compat for DataStructures to 0.19, (keep existing compat) by @github-actions[bot] in #966
• CompatHelper: bump compat for YAXArrays to 0.7, (keep existing compat) by @github-actions[bot] in #979
• CompatHelper: bump compat for MLJ to 0.21, (keep existing compat) by @github-actions[bot] in #981
• CompatHelper: bump compat for JSON to 1, (keep existing compat) by @github-actions[bot] in #984
• CompatHelper: bump compat for Makie in [weakdeps] to 0.24, (keep existing compat) by @github-actions[bot] in #958
• CompatHelper: bump compat for Makie in [weakdeps] to 0.23, (keep existing compat) by @github-actions[bot] in #956
• CompatHelper: bump compat for Interpolations to 0.16, (keep existing compat) by @github-actions[bot] in #953
• docs: minor clarification to Makie backend selection by @PeterBaker0 in #961
• Bump actions/checkout from 4 to 5 by @dependabot[bot] in #976
• CompatHelper: bump compat for JSON to 1, (keep existing compat) by @github-actions[bot] in #986
• Support independent scenarios viz legend rendering by @Zapiano in #978
• Fix factor update bug by @ConnectedSystems in #988
• Update key dependencies and bump version by @ConnectedSystems in #989
• Bump project version prior to new release by @Zapiano in #990

Full Changelog: v0.12.0...v0.13.0

v0.12.0

What's Changed

• update fecundity min area variable name for clarity by @eco-ben in #810
• Apply changes to ADRIA to make it compatible with CoralBlox model by @Zapiano in #817
• CompatHelper: add new compat entry for CoralBlox at version 1, (keep existing compat) by @github-actions[bot] in #821
• Julia format GH workflow, format all files by @arlowhite in #790
• Fix docs builder, add .git-blame-ignore-revs and document by @arlowhite in #823
• fix helper dimension size error by @DanTanAtAims in #824
• Add reshape to fix dimension mismatch when logging dhw tolerances by @Rosejoycrocker in #827
• updates docs github action to use Julia 1.10.* by @arlowhite in #829
• Remove Manifest from gitignore by @Zapiano in #830
• Fix docs errors by @arlowhite in #832
• convert recruitment from relative area to area before use by @DanTanAtAims in #834
• Rename metrics :sites dimension with :locations by @Zapiano in #831
• lowercase png extensions to fix Documenter by @arlowhite in #837
• Fix cover loading and size class lower bound by @DanTanAtAims in #833
• feat: migrating and updating docker functionality + publish pipeline by @PeterBaker0 in #839
• fix: stale links in docker docs by @PeterBaker0 in #843
• Fix error in bin size for sensitivity.outcome_map by @Rosejoycrocker in #702
• Overly constrained argument types causing tests to fail by @ConnectedSystems in #844
• feat: restore unit testing and add julia caching by @PeterBaker0 in #845
• fix reefmod domain load initial cover by @DanTanAtAims in #846
• Add metadata to metrics YAXArrays by @Zapiano in #847
• Improve summarize performance by using mapslices by @Zapiano in #862
• Pin NetCDF.jl and Zarr.jl in order to pin DiskArrays.jl by @Zapiano in #864
• Bump actions/checkout from 3 to 4 by @dependabot[bot] in #865
• Bump docker/login-action from 2 to 3 by @dependabot[bot] in #866
• Bump docker/build-push-action from 4 to 6 by @dependabot[bot] in #867
• Bump docker/metadata-action from 4 to 5 by @dependabot[bot] in #868
• Improvements to model performance by reducing allocations by @ConnectedSystems in #871
• Minor change for performance by @ConnectedSystems in #877
• Julia 1.11 Manifest and Pkg update by @arlowhite in #876
• Apply CompatHelper suggestions, free NetCDF,Zarr; add & pin DiskArrays by @arlowhite in #878
• LERC_jll 3 to 4, downgrade DimensionalData to 0.27.9, Julia Pkg update by @arlowhite in #879
• Cyclone mortalities assigned to wrong group by @DanTanAtAims in #888
• Update code and dependencies to GeoMakie v0.7.x by @ConnectedSystems in #884
• DiskArrays 0.4.5, Pkg update by @arlowhite in #889
• Viz metadata by @Zapiano in #863
• Fix StackOverflow error when plotting maps by @ConnectedSystems in #891
• Add counterfactual minus guided/unguided diff at location level by @Zapiano in #726
• Remove duplicate rules by @Zapiano in #899
• Fix rule extraction to handle constant factors by @Zapiano in #870
• Incorporate recruitment to growth constraints and cap seeding to habitable area by @DanTanAtAims in #906
• Add additional convenience functions and update docstrings by @ConnectedSystems in #908
• Remove defunct method seed_corals! by @ConnectedSystems in #909
• Fix DHW scenario viz again by @ConnectedSystems in #903
• Switch to logging number of coral deployed by @ConnectedSystems in #910
• Add DEA functions and plotting to ADRIA.analysis by @Rosejoycrocker in #896
• Add method to display all DHW scenarios for the currently set RCP/SSP by @ConnectedSystems in #914
• Minor fix on docs by @vitorhirata in #920
• Pin DiskArrays to 0.4.9 by @vitorhirata in #922
• Updated factor bounds setting method by @ConnectedSystems in #917
• Pin DiskArrays to 0.4.9 in docs Manifest and v1.11 Manifest by @vitorhirata in #924
• Small change to parameter description to avoid confusion by @ConnectedSystems in #928
• Add extraction of feature set to support analyses and assessment by @ConnectedSystems in #907
• Bump codecov/codecov-action from 4 to 5 by @dependabot[bot] in #901
• CompatHelper: bump compat for DimensionalData to 0.29, (keep existing compat) by @github-actions[bot] in #931
• CompatHelper: bump compat for Makie in [weakdeps] to 0.22, (keep existing compat) by @github-actions[bot] in #930
• CompatHelper: bump compat for YAXArrays to 0.6, (keep existing compat) by @github-actions[bot] in #932
• Fix tests of viz/spatial and metrics/spatial by @vitorhirata in #923
• Avoid reshape for performance by @ConnectedSystems in #933
• Custom categorical distribution by @DanTanAtAims in #927
• Add spatial visualisations for decision matrices by @Rosejoycrocker in #893
• Correct RCP identifier in result directory by @ConnectedSystems in #937
• Add cyclone mortality to documentation by @Zapiano in #936
• Remove synopsis from documentation by @Zapiano in #938
• Minor tweaks to taxa visualization by @ConnectedSystems in #915
• Update docs to configure Julia Formatter extension by @ConnectedSystems in #939
• Replace and deprecate remaining use of site_k_area by @ConnectedSystems in #929
• Considering spatial dispersal of intervention locations by @ConnectedSystems in #934
• Fix docs build by @Zapiano in #945
• Bump julia-actions/julia-format from 3 to 4 by @dependabot[bot] in #948
• Speed up timeseries clustering by @Zapiano in #949
• Fix multiple tests by @Zapiano in #951
• Changes to enable recent RME domain loading by @Zapiano in #952
• Speedup bleaching by @Zapiano in #954
• Update Manifest by @Zapiano in #957
• Bump project version prior to new release by @Zapiano in #968

New Contributors

• @eco-ben made their first contribution in #810
• @vitorhirata made their first contribution in #920

Full Changelog: v0.11.0...v0.12.0

v0.11.0

What's Changed

• New data package version v0.6.0.
• Fix bug where cover instead of leftover space was being used in stand alone site selection by @Rosejoycrocker in #610
• Add a new ten site example domain for testing by @Rosejoycrocker in #628
• Fix mcda method bugs by @Rosejoycrocker in #629
• Fix set_factor_bounds! out of bounds for discrete factors by @Zapiano in #631
• Address MCDA error for single locations by @ConnectedSystems in #640
• Replaces distance sorting with restrictions on the number of selected locations in the same reef by @Rosejoycrocker in #635
• Changes to make ADRIA precompilable under Julia v1.10 by @ConnectedSystems in #646
• Update use of Makie/GeoMakie to address deprecation errors by @ConnectedSystems in #647
• Add connectivity data to result set storage by @Rosejoycrocker in #643
• Fix larval connectivity bug by @ConnectedSystems in #648
• Remove examples dir issue #584 by @DanTanAtAims in #651
• Update tests for new sampling method/factor definitions by @ConnectedSystems in #653
• Update factor type documentation by @ConnectedSystems in #654
• Update factor types and their use by @ConnectedSystems in #636
• Speed up calculation of truncated normal mean and cdf by @DanTanAtAims in #652
• Add a default size for scenario plots by @ConnectedSystems in #657
• CompatHelper: add new compat entry for StatsFuns at version 1, (keep existing compat) by @github-actions in #658
• CompatHelper: add new compat entry for SpecialFunctions at version 2, (keep existing compat) by @github-actions in #659
• Fix bleaching mortality by @ConnectedSystems in #660
• Clean up settler cover function to reduce confusion by @ConnectedSystems in #662
• Only load up relevant RME SSP datasets by @ConnectedSystems in #663
• Reset deployed-coral-risk-tol range by @ConnectedSystems in #664
• Clean up scenario running methods by @ConnectedSystems in #665
• Clean up use of TP matrices to align with conceptualisation of connectivity by @ConnectedSystems in #667
• Support updated domain structure by @ConnectedSystems in #669
• Adjustment to simulated events to address numerical errors by @ConnectedSystems in #668
• Return 0 in cases where lb > ub by @ConnectedSystems in #666
• Fix erroneous handling of location IDs by @ConnectedSystems in #671
• Fix error in domain loading when cluster_id is already in string format by @Rosejoycrocker in #673
• Add test domain for ReefModDomain type by @Rosejoycrocker in #675
• Additional setup instructions for code style and formatting by @ConnectedSystems in #676
• Fix cyclone sorting by @Zapiano in #683
• removed deprecate functions and function calls by @DanTanAtAims in #684
• restructured documentation image directories by @DanTanAtAims in #685
• Fix readjustment of number of slices bug in RSA by @Rosejoycrocker in #679
• Truncated normal changes by @DanTanAtAims in #687
• Allow user to set whatever bounds they wish by @ConnectedSystems in #688
• Switch to YAXArrays when runnin scenarios by @Zapiano in #690
• Remove factors input from rsa() and use scenario dataframe column names instead by @Rosejoycrocker in #696
• updated data loading test for migration to YAXArrays by @DanTanAtAims in #697
• Further updates to scenario runs with MCDA by @ConnectedSystems in #698
• Remove MKL from build process by @ConnectedSystems in #705
• Migrate metrics.jl to YAXArrays by @Zapiano in #709
• Yax cube tests by @DanTanAtAims in #704
• Yax viz by @DanTanAtAims in #703
• Yax test update by @DanTanAtAims in #700
• Remove GC workaround by @ConnectedSystems in #711
• Yax migration miscellaneous by @Zapiano in #715
• Keep metadata in results by @ConnectedSystems in #716
• CompatHelper: bump compat for DimensionalData to 0.26, (keep existing compat) by @github-actions in #714
• Finalize update of standalone MCDA methods by @ConnectedSystems in #717
• Update all tests and remove NamedDims and AxisKeys from ADRIA.jl by @Zapiano in #718
• Validating MCDA methods and initial clean/update of tests by @ConnectedSystems in #719
• Migrate from NamedDimsArrays to YAXArrays by @Zapiano in #695
• Provide a succinct overview of MCDA by @ConnectedSystems in #720
• Add support to cyclone mortality to ReefModDomain by @Zapiano in #722
• Save right intervention label at ResultSet ranks YAXArray by @Zapiano in #724
• Hacky support for later RME reef id list by @ConnectedSystems in #731
• Add support for specifying locations by @ConnectedSystems in #732
• Support more vector types for maps by @ConnectedSystems in #736
• Clean up connectivity and centrality methods by @ConnectedSystems in #737
• Additional rank methods to determine number of locations intervened on per timestep by @ConnectedSystems in #738
• Collection of miscellaneous changes by @ConnectedSystems in #740
• Fix bug, min. locations to select > available locations by @ConnectedSystems in #741
• CompatHelper: bump compat for DimensionalData to 0.27, (keep existing compat) by @github-actions in #744
• Connectivity viz by @DanTanAtAims in #742
• Fix locations selection in ReefMod datapackage cyclone mortality loading by @Zapiano in #723
• Only rank locations with available area > 0 by @ConnectedSystems in #734
• use provided centrality measures instead of defaults by @DanTanAtAims in #751
• Improved support for spatial maps by @ConnectedSystems in #750
• Repeat mention that the VS Code extension is being setup by @ConnectedSystems in #748
• Convenience plotting method for connectivity/centralities by @ConnectedSystems in #752
• Support plotting DHW and cyclone (mortality) scenarios by @ConnectedSystems in #758
• Support deactivating environmental disturbances by @ConnectedSystems in #759
• RME Result Interface by @DanTanAtAims in #745
• add range to for loop by @DanTanAtAims in #762
• Visualization for taxonomy cover. by @DanTanAtAims in #763
• Fix erroneous function call in docstrings by @ConnectedSystems in #773
• CompatHelper: bump compat for NetCDF to 0.12, (keep existing compat) by @github-actions in #765
• CompatHelper: add new compat entry for GraphMakie in [weakdeps] at version 0.5, (keep existing compat) by @github-actions in #766
• CompatHelper: add new compat entry for GeoMakie in [weakdeps] at version 0.6, (keep existing compat) by @github-actions in #767
• CompatHelper: add new compat entry for Makie in [weakdeps] at version 0.21, (keep existing compat) by @github-actions in #764
• improve load_domain docs by @arlowhite in #733
  ...

v0.10.0

What's Changed

• Add .JuliaFormatter.toml to .gitignore by @Zapiano in #499
• Update viz.clustered_scenarios to allow confidence interval plot by @Zapiano in #482
• Deprecate run_scenarios(scens, dom, ...) by @ConnectedSystems in #476
• Fix _time_labels missing last label by @Zapiano in #496
• Refactor viz.scenario by @Zapiano in #500
• CompatHelper: bump compat for SciMLBase to 2, (keep existing compat) by @github-actions in #504
• Update CSV.write writeheader parameter to header by @Zapiano in #506
• Fix bug causing Domain loading with RCP to error by @Rosejoycrocker in #511
• CompatHelper: bump compat for MLJ to 0.20, (keep existing compat) by @github-actions in #515
• Remove top_n parameter from usage by @Rosejoycrocker in #514
• Add function to find robust scenarios across several metrics by @Zapiano in #463
• Add :summary option to viz.scenarios by @Zapiano in #505
• Add support series and map binary clusters plots by @Zapiano in #521
• Fix scenarios subsetting now working by @Zapiano in #523
• Rename rs_input with scenarios by @Zapiano in #533
• Fix bug in how sensitivity.outcome_map() treats categorical variables. by @Rosejoycrocker in #491
• CompatHelper: bump compat for NCDatasets to 0.13, (keep existing compat) by @github-actions in #536
• Add interface function to query number of scenarios in result set by @ConnectedSystems in #527
• Add summarize and turn per_loc and loc_trajectory into alias by @Zapiano in #537
• Add missing scenario analysis function definitions to analysis module by @ConnectedSystems in #541
• Extract call to run scenarios inside tests to external function by @Zapiano in #540
• Broadcast _check_discrete inside update_params by @Zapiano in #539
• Adds a series of aggregation functions for location selection ranks by @Rosejoycrocker in #431
• Add functions for repeated tasks when performing location selection by @Rosejoycrocker in #434
• Update analysis docs with recent scenarios and clusters developments by @Zapiano in #545
• Resolve Out-of-Memory issues when working with larger spatial areas by @ConnectedSystems in #542
• CompatHelper: add new compat entry for TOML at version 1, (keep existing compat) by @github-actions in #553
• CompatHelper: add new compat entry for Statistics at version 1, (keep existing compat) by @github-actions in #554
• Avoid assuming where the RCP column is when adjusting scenario spec by @ConnectedSystems in #558
• Fix integer dims reference in location_selection_frequency() by @Rosejoycrocker in #563
• Add function to alter sampling bounds on parameters to specified value. by @Rosejoycrocker in #490
• Coral cover consistently represented as relative to coral habitable area by @ConnectedSystems in #555
• Fix bug due to missing default_bounds in EnvironmentalLayer and Coral model components by @Rosejoycrocker in #569
• Prevent test_rs() from creating tmp dir inside test/data by @Zapiano in #576
• Visualizations to be agnostic to Makie backend by @ConnectedSystems in #570
• Apply blue styleguide to some files by @Zapiano in #579
• Functions to plot spatial distributions of site selection frequencies by @Rosejoycrocker in #449
• Add functions used for location selection to separate decision module by @Rosejoycrocker in #571
• Update use of progress meter to resolve deprecation warning by @ConnectedSystems in #581
• Add ability to perform convergence analysis by @Rosejoycrocker in #552
• Add separate weighting parameter for depth criteria by @Rosejoycrocker in #573
• Replace package NCDatasets by NetCDF by @Zapiano in #583
• Add conversion to scientific notation by @Zapiano in #574
• CompatHelper: add new compat entry for NetCDF at version 0.11, (keep existing compat) by @github-actions in #588
• Change approach to listing supported MCDA methods by @ConnectedSystems in #593
• Use min-max normalisation for heat stress by @Rosejoycrocker in #595
• Remove defunct function for post processing results into power-BI friendly csv file by @Rosejoycrocker in #594
• Fix viz.scenarios bug introduced in changes to scenario_confint! usage by @Rosejoycrocker in #589
• Use min-max normalisation for heat stress by @Rosejoycrocker in #596
• Normalize sampled MCDA weights by @Rosejoycrocker in #582
• Handle cases where connectivity directories may be empty by @ConnectedSystems in #597
• Remove list of ignored JMcDM methods by @ConnectedSystems in #599
• Implement cyclone mortality scenarios by @Zapiano in #585
• CompatHelper: add new compat entry for DimensionalData at version 0.25, (keep existing compat) by @github-actions in #606
• CompatHelper: bump compat for Interpolations to 0.15, (keep existing compat) by @github-actions in #604
• CompatHelper: add new compat entry for YAXArrays at version 0.5, (keep existing compat) by @github-actions in #605
• Fix proportional_adjustment vector conversion computational error by @Zapiano in #607
• Fix treatment of categorical factors in regional sensitivity analysis by @Rosejoycrocker in #601
• Deactivated interventions should be considered separately by @ConnectedSystems in #598
• Adjust language in architectural overview to match recent changes by @ConnectedSystems in #612
• Add tests for figure creation by @ConnectedSystems in #608
• Attach dummy wave and cyclone data by @ConnectedSystems in #616
• CompatHelper: bump compat for SIRUS to 2, (keep existing compat) by @github-actions in #617
• Support RSA with large sample sizes by @ConnectedSystems in #614
• Add more detail regarding sequence of events by @ConnectedSystems in #611
• Changes to dhw and wave logs to store scenario and site means and stds by @Rosejoycrocker in #623
• Fix bug introduced by SIRUS v2.0.1 by @Zapiano in #625

Full Changelog: v0.9.0...v0.10.0

v0.9.0

What's Changed

• Miscellaneous changes to improve type infererability and precompilation times by @ConnectedSystems in #455
• Changes to improve performance of PAWN sensitivity analysis by @ConnectedSystems in #457
• Fix print_rules condition by @Zapiano in #460
• Update ADRIA logo by @Zapiano in #461
• Adjust PAWN function to support 1D matrix for convenience by @ConnectedSystems in #462
• Update Reef Tourism Index regression coefficient (temporary solution) by @ConnectedSystems in #466
• Include rule_extraction.jl in viz.jl by @Zapiano in #468
• Add new cluster_rules method that accepts BitVector or Vector{Bool} by @Zapiano in #467
• Add option to show GBRMPA management zones by @ConnectedSystems in #470
• Precompilation reduction by @ConnectedSystems in #469
• Update sensitivity module to follow Blue style by @ConnectedSystems in #471
• Update Doc mentioning blue style guide by @Zapiano in #472
• Update viz.rules_scatter to accept targeted clusters by @Zapiano in #475
• Remove locations with no space from consideration for interventions by @ConnectedSystems in #479
• Rename time_series_clustering and ts_cluster by @Zapiano in #478
• Fix duplicate x-axis values bug in viz.outcome_map() by @Rosejoycrocker in #442
• Add Documentation Sensitivity section for Rule Induction algorithm by @Zapiano in #477
• Update version number to 0.9.0 by @Rosejoycrocker in #497

Full Changelog: v0.8.0...v0.9.0

v0.8.0

What's Changed

• CompatHelper: bump compat for SparseArrayKit to 0.3, (keep existing compat) by @github-actions in #403
• Fix map display (default display when plotting Domain or ResultSet) by @ConnectedSystems in #407
• Fix excessive memory use (#405) by @ConnectedSystems in #409
• Update ReefMod interface to match new species list by @Rosejoycrocker in #408
• Adjustments to heritability based on feedback by @ConnectedSystems in #417
• Update docstrings with missing detail by @ConnectedSystems in #418
• Implement relevant struct to handle SIRUS rule extraction by @Zapiano in #420
• Small miscellaneous changes for scenario visualizations by @ConnectedSystems in #412
• Implement rule extracting function by @Zapiano in #421
• Updated Reef Indices by @ConnectedSystems in #415
• Remove dependency on ImageMagick in favour of ImageIO by @ConnectedSystems in #414
• Fix unnecessarily squashed figure when plotting outcome map for 1 factor by @ConnectedSystems in #425
• Move and modify behaviour of target_cluster function by @Zapiano in #424
• Fix workers crashing and leaking memory when running scenarios in parallel by @ConnectedSystems in #416
• Fix scenario metrics with field :scenario instead of :scenarios by @Zapiano in #430
• Fix error when running samples generated from sample_site_selection() by @Rosejoycrocker in #432
• Incorporate settler DHW tolerances by @ConnectedSystems in #437
• Address very slow extraction of relative cover values by @ConnectedSystems in #435
• Update prototype exploration UI to work with recent changes by @ConnectedSystems in #436
• Fix clustering map visualisation by @Zapiano in #439
• Fix loc_trajectory and per_loc function by @Zapiano in #438
• Fix time_series_clustering for variable series with k > 0 by @Zapiano in #433
• Update SIRUS StableRules type by @Zapiano in #443
• Add Blue Style Guide badge to README by @Zapiano in #441
• Fix print_rules adding & when there are two clauses by @Zapiano in #444
• Implement rule scatter plot function by @Zapiano in #422
• Documentation improvement by @Zapiano in #429
• More updates to documentation by @ConnectedSystems in #446

Full Changelog: v0.7.0...v0.8.0