Pr/v3.0.x OMPIO Crash on Large Data

.github/CONTRIBUTING.md

@@ -0,0 +1,89 @@
+# How to contribute to Open MPI
+
+First off, thank you for taking the time to prepare a contribution to
+Open MPI!
+
+![You're awesome!](https://www.open-mpi.org/images/youre-awesome.jpg)
+
+General information about contributing to the Open MPI project can be found at the [Contributing to Open MPI webpage](https://www.open-mpi.org/community/contribute/).
+The instructions below are specifically for opening issues and pull requests against Open MPI.
+
+## Content
+
+We love getting contributions from anyone.  But keep in mind that Open
+MPI is used in production environments all around the world.
+
+If you're contributing a small bug fix, awesome!
+
+If you're contributing a large new piece of functionality, that will
+be best viewed if you -- or someone, anyone -- is also stepping up to
+help maintain that functionality over time.  We love new ideas and new
+features, but we do need to be realistic in what we can reliably test
+and deliver to our users.
+
+## Contributor's Declaration
+
+In order to ensure that we can keep distributing Open MPI under our
+[open source license](LICENSE), we need to ensure that all
+contributions are compatible with that license.
+
+To that end, we require that all Git commits contributed to Open MPI
+have a "Signed-off-by" token indicating that the commit author agrees
+with [Open MPI's Contributor's
+Declaration](https://github.com/open-mpi/ompi/wiki/Admistrative-rules#contributors-declaration).
+
+If you have not already done so, please ensure that:
+
+1. Every commit contains exactly the "Signed-off-by" token.  You can
+add this token via `git commit -s`.
+1. The email address after "Signed-off-by" must match the Git commit
+email address.
+
+## **Did you find a bug?**
+
+* **Ensure the bug was not already reported** by searching on GitHub under [Issues](https://github.com/open-mpi/ompi/issues).
+
+* If you're unable to find an open issue addressing the problem, [open a new one](https://github.com/open-mpi/ompi/issues/new).
+
+* For more detailed information on submitting a bug report and creating an issue, visit our [Bug Tracking webpage](https://www.open-mpi.org/community/help/bugs.php).
+
+## **Did you write a patch that fixes a bug?**
+
+* Open a new GitHub pull request with the patch.
+
+* Ensure the PR description clearly describes the problem and solution. If there is an existing GitHub issue open describing this bug, please include it in the description so we can close it.
+
+* Before submitting, please read the [Contributing to the Open MPI Project FAQ](https://www.open-mpi.org/faq/?category=contributing) web page, and the [SubmittingPullRequests](https://github.com/open-mpi/ompi/wiki/SubmittingPullRequests) wiki.  In particular, note that all git commits contributed to Open MPI require a Signed-off by line.
+
+## **Do you intend to add a new feature or change an existing one?**
+
+* Suggest your change on the [devel mail list](https://www.open-mpi.org/community/lists/ompi.php) and start writing code.  The [developer level technical information on the internals of Open MPI](https://www.open-mpi.org/faq/?category=developers) may also be useful for large scale features.
+
+* Do not open an issue on GitHub until you have collected positive feedback about the change. GitHub issues are primarily intended for bug reports and fixes.
+
+## **Do you have questions about the source code?**
+
+* First checkout the [developer level technical information on the internals of Open MPI](https://www.open-mpi.org/faq/?category=developers).  A paper describing the [multi-component architecture](https://www.open-mpi.org/papers/ics-2004/ics-2004.pdf)  of Open MPI may also be helpful.  The [devel mail list](https://www.open-mpi.org/community/lists/ompi.php) is a good place to post questions about the source code as well.
+
+## Style
+
+There are a small number of style rules for Open MPI:
+
+1. For all code:
+    * 4 space tabs.  No more, no less.
+    * No tab characters *at all*.  2 indentations are 8 spaces -- not a tab.
+    * m4 code is a bit weird in terms of indentation: we don't have a
+      good, consistent indentation style in our existing code.  But
+      still: no tab characters at all.
+1. For C code:
+    * We prefer if all blocks are enclosed in `{}` (even 1-line
+      blocks).
+    * We prefer that if you are testing equality with a constant, put
+      the constant on the *left* of the `==`.  E.g., `if (NULL ==
+      ptr)`.
+    * If there are no parameters to a C function, declare it with
+      `(void)` (vs. `()`).
+
+That's about it.  Thank you!
+
+- The Open MPI Team

.github/issue_template.md

@@ -0,0 +1,29 @@
+Thank you for taking the time to submit an issue!
+
+## Background information
+
+### What version of Open MPI are you using? (e.g., v1.10.3, v2.1.0, git branch name and hash, etc.)
+
+
+
+### Describe how Open MPI was installed (e.g., from a source/distribution tarball, from a git clone, from an operating system distribution package, etc.)
+
+
+
+### Please describe the system on which you are running
+
+* Operating system/version: 
+* Computer hardware: 
+* Network type: 
+
+-----------------------------
+
+## Details of the problem
+
+Please describe, in detail, the problem that you are having, including the behavior you expect to see, the actual behavior that you are seeing, steps to reproduce the problem, etc.  It is most helpful if you can attach a small program that a developer can use to reproduce your problem.
+
+**Note**: If you include verbatim output (or a code block), please use a [GitHub Markdown](https://help.github.com/articles/creating-and-highlighting-code-blocks/) code block like below:
+```shell
+shell$ mpirun -np 2 ./hello_world
+```
+

.gitignore

@@ -67,6 +67,7 @@ vc70.pdb
 .hg
 .hgignore_local
 stamp-h?
+AUTHORS
 
 ar-lib
 ylwrap
@@ -128,6 +129,7 @@ examples/ring_oshmem
 examples/hello_oshmem
 examples/ring_oshmemfh
 examples/hello_oshmemfh
+examples/hello_oshmemcxx
 examples/oshmem_circular_shift
 examples/oshmem_max_reduction
 examples/oshmem_shmalloc
@@ -179,6 +181,8 @@ ompi/mca/io/romio314/romio/test/pfcoll_test.f
 ompi/mca/io/romio314/romio/test/runtests
 ompi/mca/io/romio314/romio/util/romioinstall
 
+ompi/mca/osc/monitoring/osc_monitoring_template_gen.h
+
 ompi/mca/pml/v/autogen.vprotocols
 ompi/mca/pml/v/mca_vprotocol_config_output
 
@@ -244,6 +248,7 @@ ompi/mpiext/cuda/c/mpiext_cuda_c.h
 ompi/tools/mpisync/mpisync
 ompi/tools/mpisync/mpirun_prof
 ompi/tools/mpisync/ompi_timing_post
+ompi/tools/mpisync/mpisync.1
 
 ompi/tools/ompi_info/ompi_info
 ompi/tools/ompi_info/ompi_info.1
@@ -255,6 +260,7 @@ ompi/tools/wrappers/mpicc.1
 ompi/tools/wrappers/mpic++.1
 ompi/tools/wrappers/mpicxx.1
 ompi/tools/wrappers/mpifort.1
+ompi/tools/wrappers/mpijavac.1
 ompi/tools/wrappers/ompi_wrapper_script
 ompi/tools/wrappers/ompi.pc
 ompi/tools/wrappers/ompi-c.pc
@@ -301,24 +307,43 @@ opal/mca/event/libevent*/libevent/include/event2/event-config.h
 
 opal/mca/hwloc/hwloc*/hwloc/include/hwloc/autogen/config.h
 opal/mca/hwloc/hwloc*/hwloc/include/private/autogen/config.h
+opal/mca/hwloc/base/static-components.h.new.extern
+opal/mca/hwloc/base/static-components.h.new.struct
 
 opal/mca/installdirs/config/install_dirs.h
 
 opal/mca/pmix/pmix*/pmix/include/pmix/autogen/config.h
 opal/mca/pmix/pmix*/pmix/include/pmix/autogen/config.h.in
 opal/mca/pmix/pmix*/pmix/src/include/private/autogen/config.h.in
 opal/mca/pmix/pmix*/pmix/src/include/private/autogen/config.h
-opal/mca/hwloc/base/static-components.h.new.extern
-opal/mca/hwloc/base/static-components.h.new.struct
-opal/mca/pmix/pmix2x/pmix/src/include/frameworks.h
-opal/mca/pmix/pmix2x/pmix/src/mca/pinstalldirs/config/pinstall_dirs.h
-opal/mca/pmix/pmix2x/pmix/config/autogen_found_items.m4
-opal/mca/pmix/pmix2x/pmix/src/include/pmix_config.h
-opal/mca/pmix/pmix2x/pmix/src/include/pmix_config.h.in
-opal/mca/pmix/pmix2x/pmix/include/pmix_rename.h
-opal/mca/pmix/pmix2x/pmix/include/pmix_version.h
-opal/mca/pmix/pmix2x/pmix/src/util/keyval/keyval_lex.c
-opal/mca/pmix/pmix2x/pmix/src/util/show_help_lex.c
+opal/mca/pmix/pmix*/pmix/src/include/frameworks.h
+opal/mca/pmix/pmix*/pmix/src/mca/pinstalldirs/config/pinstall_dirs.h
+opal/mca/pmix/pmix*/pmix/config/autogen_found_items.m4
+opal/mca/pmix/pmix*/pmix/src/include/pmix_config.h
+opal/mca/pmix/pmix*/pmix/src/include/pmix_config.h.in
+opal/mca/pmix/pmix*/pmix/include/pmix_common.h
+opal/mca/pmix/pmix*/pmix/include/pmix_rename.h
+opal/mca/pmix/pmix*/pmix/include/pmix_version.h
+opal/mca/pmix/pmix*/pmix/src/util/keyval/keyval_lex.c
+opal/mca/pmix/pmix*/pmix/src/util/show_help_lex.c
+opal/mca/pmix/pmix*/pmix/examples/alloc
+opal/mca/pmix/pmix*/pmix/examples/client
+opal/mca/pmix/pmix*/pmix/examples/debugger
+opal/mca/pmix/pmix*/pmix/examples/debuggerd
+opal/mca/pmix/pmix*/pmix/examples/dmodex
+opal/mca/pmix/pmix*/pmix/examples/dynamic
+opal/mca/pmix/pmix*/pmix/examples/fault
+opal/mca/pmix/pmix*/pmix/examples/jctrl
+opal/mca/pmix/pmix*/pmix/examples/pub
+opal/mca/pmix/pmix*/pmix/examples/server
+opal/mca/pmix/pmix*/pmix/examples/tool
+
+opal/mca/pmix/ext3x/ext3x.c
+opal/mca/pmix/ext3x/ext3x.h
+opal/mca/pmix/ext3x/ext3x_client.c
+opal/mca/pmix/ext3x/ext3x_component.c
+opal/mca/pmix/ext3x/ext3x_server_north.c
+opal/mca/pmix/ext3x/ext3x_server_south.c
 
 opal/tools/opal-checkpoint/opal-checkpoint
 opal/tools/opal-checkpoint/opal-checkpoint.1
@@ -357,6 +382,7 @@ orte/test/mpi/accept
 orte/test/mpi/attach
 orte/test/mpi/bad_exit
 orte/test/mpi/bcast_loop
+orte/test/mpi/binding
 orte/test/mpi/concurrent_spawn
 orte/test/mpi/connect
 orte/test/mpi/crisscross
@@ -367,6 +393,7 @@ orte/test/mpi/hello_output
 orte/test/mpi/hello_show_help
 orte/test/mpi/hello
 orte/test/mpi/hello++
+orte/test/mpi/interlib
 orte/test/mpi/loop_child
 orte/test/mpi/loop_spawn
 orte/test/mpi/mpi_barrier
@@ -377,6 +404,7 @@ orte/test/mpi/parallel_r8
 orte/test/mpi/parallel_r64
 orte/test/mpi/parallel_w8
 orte/test/mpi/parallel_w64
+orte/test/mpi/pinterlib
 orte/test/mpi/pmix
 orte/test/mpi/pubsub
 orte/test/mpi/read_write
@@ -386,6 +414,7 @@ orte/test/mpi/segv
 orte/test/mpi/simple_spawn
 orte/test/mpi/slave
 orte/test/mpi/spawn_multiple
+orte/test/mpi/xlib
 orte/test/mpi/ziaprobe
 orte/test/mpi/ziatest
 orte/test/mpi/*.dwarf
@@ -413,6 +442,9 @@ orte/test/mpi/memcached-dummy
 orte/test/mpi/coll_test
 orte/test/mpi/badcoll
 orte/test/mpi/iof
+orte/test/mpi/no-disconnect
+orte/test/mpi/nonzero
+orte/test/mpi/add_host
 
 orte/test/system/radix
 orte/test/system/sigusr_trap
@@ -452,6 +484,7 @@ orte/test/system/orte_sensor
 orte/test/system/event-threads
 orte/test/system/test-time
 orte/test/system/psm_keygen
+orte/test/system/pspawn
 orte/test/system/regex
 orte/test/system/orte_errors
 orte/test/system/evthread-test
@@ -470,6 +503,7 @@ orte/test/system/opal_db
 orte/test/system/ulfm
 orte/test/system/pmixtool
 orte/test/system/orte_notify
+orte/test/system/threads
 
 orte/tools/orte-checkpoint/orte-checkpoint
 orte/tools/orte-checkpoint/orte-checkpoint.1
@@ -500,6 +534,8 @@ orte/tools/orted/orted
 orte/tools/orted/orted.1
 orte/tools/orterun/orterun
 orte/tools/orterun/orterun.1
+orte/tools/prun/prun
+orte/tools/prun/prun.1
 orte/tools/wrappers/ortecc-wrapper-data.txt
 orte/tools/wrappers/ortec++-wrapper-data.txt
 orte/tools/wrappers/ortecc.1
@@ -560,6 +596,13 @@ oshmem/tools/wrappers/shmemfort.1
 oshmem/tools/wrappers/shmemrun.1
 oshmem/tools/wrappers/shmemcc-wrapper-data.txt
 oshmem/tools/wrappers/shmemfort-wrapper-data.txt
+oshmem/tools/wrappers/oshCC.1
+oshmem/tools/wrappers/oshc++.1
+oshmem/tools/wrappers/oshcxx.1
+oshmem/tools/wrappers/shmemCC.1
+oshmem/tools/wrappers/shmemc++-wrapper-data.txt
+oshmem/tools/wrappers/shmemc++.1
+oshmem/tools/wrappers/shmemcxx.1
 
 test/asm/atomic_math_noinline
 test/asm/atomic_barrier
@@ -600,6 +643,7 @@ test/datatype/ddt_raw
 test/datatype/opal_datatype_test
 test/datatype/position_noncontig
 test/datatype/unpack_ooo
+test/datatype/unpack_hetero
 
 test/dss/dss_buffer
 test/dss/dss_copy
@@ -615,6 +659,11 @@ test/event/event-test
 test/event/time-test
 
 test/monitoring/monitoring_test
+test/monitoring/check_monitoring
+test/monitoring/example_reduce_count
+test/monitoring/test_overhead
+test/monitoring/test_pvar_access
+
 
 test/mpi/environment/chello
 
@@ -647,3 +696,7 @@ test/util/opal_sos
 test/util/opal_path_nfs
 test/util/opal_path_nfs.out
 test/util/opal_bit_ops
+test/util/bipartite_graph
+
+opal/test/reachable/reachable_netlink
+opal/test/reachable/reachable_weighted

.mailmap

@@ -107,3 +107,7 @@ Alex Mikheev <[email protected]> <[email protected]>
 Thomas Naughton <[email protected]> <[email protected]>
 
 Geoffrey Paulsen <[email protected]> <[email protected]>
+
+Anandhi S Jayakumar <[email protected]>
+
+Mohan Gandhi <[email protected]>

.travis.yml

@@ -14,10 +14,9 @@ compiler:
     - gcc
     - clang
 
-# Iterate over 2 different OSs
+# Test only linux now
 os:
     - linux
-    - osx
 
 addons:
     # For Linux, make sure we have some extra packages that we like to