more c99 updates

[hjelmn]

This commit does two things. It removes checks for C99 required
headers (stdlib.h, string.h, signal.h, etc). Additionally it removes
definitions for required C99 types (intptr_t, int64_t, int32_t, etc).

Signed-off-by: Nathan Hjelm [email protected]

[mellanox-github]

Refer to this link for build results (access rights to CI server needed):
http://bgate.mellanox.com/job/gh-ompi-master-pr/651/

Build Log
last 50 lines

GitHub pull request #657 of commit 9a75869af7f9a4c7e364928a391d4ecace4ddf15, has merge conflicts.
Setting status of 9a75869af7f9a4c7e364928a391d4ecace4ddf15 to PENDING with url http://bgate.mellanox.com:8888/jenkins/job/gh-ompi-master-pr/651/ and message: 'Build started, sha1 is original commit.'
Using conext: Mellanox
[EnvInject] - Loading node environment variables.
Building on master in workspace /var/lib/jenkins/jobs/gh-ompi-master-pr/workspace-2
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/open-mpi/ompi
 > /usr/bin/git init /var/lib/jenkins/jobs/gh-ompi-master-pr/workspace-2 # timeout=60
Fetching upstream changes from https://github.com/open-mpi/ompi
 > /usr/bin/git --version # timeout=60
using .gitcredentials to set credentials
 > /usr/bin/git config --local credential.helper store --file=/tmp/git747428839018551641.credentials # timeout=60
 > /usr/bin/git -c core.askpass=true fetch --tags --progress https://github.com/open-mpi/ompi +refs/heads/*:refs/remotes/origin/* # timeout=60
 > /usr/bin/git config --local --remove-section credential # timeout=60
 > /usr/bin/git config remote.origin.url https://github.com/open-mpi/ompi # timeout=60
 > /usr/bin/git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=60
 > /usr/bin/git config remote.origin.url https://github.com/open-mpi/ompi # timeout=60
Pruning obsolete local branches
Fetching upstream changes from https://github.com/open-mpi/ompi
using .gitcredentials to set credentials
 > /usr/bin/git config --local credential.helper store --file=/tmp/git8524264393216471750.credentials # timeout=60
 > /usr/bin/git -c core.askpass=true fetch --tags --progress https://github.com/open-mpi/ompi +refs/pull/*:refs/remotes/origin/pr/* --prune # timeout=60
 > /usr/bin/git config --local --remove-section credential # timeout=60
 > /usr/bin/git rev-parse 9a75869af7f9a4c7e364928a391d4ecace4ddf15^{commit} # timeout=60
Merging Revision 9a75869af7f9a4c7e364928a391d4ecace4ddf15 (detached) to origin/master, UserMergeOptions{mergeRemote='origin', mergeTarget='master', mergeStrategy='default', fastForwardMode='--ff'}
 > /usr/bin/git rev-parse origin/master^{commit} # timeout=60
 > /usr/bin/git config core.sparsecheckout # timeout=60
 > /usr/bin/git checkout -f origin/master # timeout=20
 > /usr/bin/git merge --ff 9a75869af7f9a4c7e364928a391d4ecace4ddf15 # timeout=60
 > /usr/bin/git config core.sparsecheckout # timeout=60
 > /usr/bin/git checkout -f 9a75869af7f9a4c7e364928a391d4ecace4ddf15 # timeout=20
ERROR: Branch not suitable for integration as it does not merge cleanly: Could not merge AnyObjectId[9a75869af7f9a4c7e364928a391d4ecace4ddf15]
[htmlpublisher] Archiving HTML reports...
[htmlpublisher] Archiving at BUILD level /var/lib/jenkins/jobs/gh-ompi-master-pr/workspace-2/cov_build to /var/lib/jenkins/jobs/gh-ompi-master-pr/builds/651/htmlreports/Coverity_Report
Setting commit status on GitHub for https://github.com/open-mpi/ompi/commit/9a75869af7f9a4c7e364928a391d4ecace4ddf15
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Setting status of 9a75869af7f9a4c7e364928a391d4ecace4ddf15 to FAILURE with url http://bgate.mellanox.com:8888/jenkins/job/gh-ompi-master-pr/651/ and message: 'Build finished.'
Using conext: Mellanox

[mellanox-github]

Refer to this link for build results (access rights to CI server needed):
http://bgate.mellanox.com/job/gh-ompi-master-pr/650/

[mellanox-github]

Refer to this link for build results (access rights to CI server needed):
http://bgate.mellanox.com/job/gh-ompi-master-pr/654/

[jsquyres]

This is minor, but superfluous.

[jsquyres]

Other than the one trivial extra line: 👍

[hjelmn]

fixed.

[mellanox-github]

Refer to this link for build results (access rights to CI server needed):
http://bgate.mellanox.com/job/gh-ompi-master-pr/665/

Build Log
last 50 lines

[...truncated 48907 lines...]
Success rank - 7: only one NUMA is scheduled.
+ val=0
+ '[' 0 -ne 0 ']'
+ set -e
[htmlpublisher] Archiving HTML reports...
[htmlpublisher] Archiving at BUILD level /var/lib/jenkins/jobs/gh-ompi-master-pr/workspace-2/cov_build to /var/lib/jenkins/jobs/gh-ompi-master-pr/builds/665/htmlreports/Coverity_Report
Setting commit status on GitHub for https://github.com/open-mpi/ompi/commit/24e2e56061a41f8326646138554f540c032a42e6
ERROR: Publisher 'Set build status on GitHub commit' aborted due to exception: 
java.io.IOException: {"message":"No commit found for SHA: 24e2e56061a41f8326646138554f540c032a42e6","documentation_url":"https://developer.github.com/v3/repos/statuses/"}
    at org.kohsuke.github.Requester.handleApiError(Requester.java:496)
    at org.kohsuke.github.Requester._to(Requester.java:245)
    at org.kohsuke.github.Requester.to(Requester.java:191)
    at org.kohsuke.github.GHRepository.createCommitStatus(GHRepository.java:780)
    at com.cloudbees.jenkins.GitHubCommitNotifier.updateCommitStatus(GitHubCommitNotifier.java:127)
    at com.cloudbees.jenkins.GitHubCommitNotifier.perform(GitHubCommitNotifier.java:84)
    at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
    at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:779)
    at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:726)
    at hudson.model.Build$BuildExecution.post2(Build.java:185)
    at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:671)
    at hudson.model.Run.execute(Run.java:1769)
    at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
    at hudson.model.ResourceController.execute(ResourceController.java:98)
    at hudson.model.Executor.run(Executor.java:374)
Caused by: java.io.IOException: Server returned HTTP response code: 422 for URL: https://api.github.com/repos/open-mpi/ompi/statuses/24e2e56061a41f8326646138554f540c032a42e6
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
    at sun.net.www.protocol.http.HttpURLConnection$6.run(HttpURLConnection.java:1675)
    at sun.net.www.protocol.http.HttpURLConnection$6.run(HttpURLConnection.java:1673)
    at java.security.AccessController.doPrivileged(Native Method)
    at sun.net.www.protocol.http.HttpURLConnection.getChainedException(HttpURLConnection.java:1671)
    at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1244)
    at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:254)
    at org.kohsuke.github.Requester.parse(Requester.java:451)
    at org.kohsuke.github.Requester._to(Requester.java:224)
    ... 13 more
Caused by: java.io.IOException: Server returned HTTP response code: 422 for URL: https://api.github.com/repos/open-mpi/ompi/statuses/24e2e56061a41f8326646138554f540c032a42e6
    at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1626)
    at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:468)
    at sun.net.www.protocol.https.HttpsURLConnectionImpl.getResponseCode(HttpsURLConnectionImpl.java:338)
    at org.kohsuke.github.Requester.parse(Requester.java:447)
    ... 14 more
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Setting status of 4d92c9989ee86fe7b0ae6fb72b2f549d95bbbda2 to FAILURE with url http://bgate.mellanox.com:8888/jenkins/job/gh-ompi-master-pr/665/ and message: 'Build finished.'
Using conext: Mellanox