Update MNI-Colin27 #257
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,43 +1,56 @@ | ||
| { | ||
| "@context": { | ||
| "@vocab": "https://openminds.om-i.org/props/" | ||
| }, | ||
| "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_2008", | ||
| "@type": "https://openminds.om-i.org/types/CommonCoordinateSpaceVersion", | ||
| "abbreviation": "MNI-Colin27", | ||
| "accessibility": { | ||
| "@id": "https://openminds.om-i.org/instances/productAccessibility/freeAccess" | ||
| }, | ||
| "anatomicalAxesOrientation": { | ||
| "@id": "https://openminds.om-i.org/instances/anatomicalAxesOrientation/RAS" | ||
| }, | ||
| "author": null, | ||
| "axesOrigin": null, | ||
|
Contributor
Author
There was a problem hiding this comment. Because it is not documented anywhere and wasn't filled out in this instance already (as opposed to 1998 version). I could probably figure it out somehow, but this will take a lot of time and effort.
Member
There was a problem hiding this comment. I will see if I get feedback on this from the MNI people |
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| "copyright": null, | ||
|
|
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| "custodian": null, | ||
| "defaultImage": null, | ||
| "description": "A stereotaxic average of T1-, T2- and PD-weighted MRI scans of the same individual (27, 12 and 12 scans, respectively). It was created at the Montreal Neurological Institute (MNI). The MRI scans were automatically registered to a common stereotaxic space using MRITOTAL (an automated volumetric registration procedure), resampled and intensity averaged. [sources: [Holmes et al. (1998)](https://doi.org/10.1097/00004728-199803000-00032) and descriptions provided under [‘MNI-Colin27’ on their homepage]( https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases)]", | ||
| "digitalIdentifier": null, | ||
| "fullDocumentation": { | ||
| "@id": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27-2008" | ||
| }, | ||
| "fullName": "MNI Colin27 Average Brain Stereotaxic Registration Model", | ||
| "funding": null, | ||
| "homepage": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases", | ||
| "howToCite": "Please make sure to follow the copyright of the [MNI Colin27 Average Brain Stereotaxic Registration Model (high-resolution version 2008)](https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27-2008). You may also cite its original publication, [Holmes et al. (1998)](http://doi.org/10.1097/00004728-199803000-00032), and the corresponding publication, [Aubert-Broche et al. (2006)](https://doi.org/10.1016/j.neuroimage.2006.03.052).", | ||
|
Member
There was a problem hiding this comment. see comment above. I'll try to clarify with the MNI people |
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| "isAlternativeVersionOf": [ | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_1998" | ||
| } | ||
| ], | ||
| "isNewVersionOf": null, | ||
| "keyword": null, | ||
| "license": null, | ||
| "nativeUnit": { | ||
| "@id": "https://openminds.om-i.org/instances/unitOfMeasurement/millimeter" | ||
| }, | ||
| "ontologyIdentifier": null, | ||
| "otherContribution": null, | ||
| "relatedPublication": [ | ||
| { | ||
| "@id": "https://doi.org/10.1097/00004728-199803000-00032" | ||
| }, | ||
| { | ||
| "@id": "https://doi.org/10.1016/j.neuroimage.2006.03.052" | ||
| } | ||
| ], | ||
| "releaseDate": "2006-08-01", | ||
| "repository": null, | ||
| "shortName": "MNI Colin27 Average Brain", | ||
| "supportChannel": null, | ||
| "usedSpecimen": null, | ||
| "versionIdentifier": "2008", | ||
| "versionInnovation": "This is the high-resolution version of the common coordinate space. These volumes are defined at a 0.5 mm isotropic voxel grid in Talairach space, with dimensions 362x434x362 (XxYxZ) and start coordinates −90,−126,−72 (x,y,z). [sources: [’Overview’ summary on their homepage]( https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27-2008) and [Aubert-Broche et al. (2006)](https://doi.org/10.1016/j.neuroimage.2006.03.052)]" | ||
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Member
There was a problem hiding this comment. To clarify: Talairach not used in original? what is meant with start coordinates ? Start: This is a higher resolved variant of the original version... |
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| } | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,28 +1,28 @@ | ||
| { | ||
| "@context": { | ||
| "@vocab": "https://openminds.om-i.org/props/" | ||
| }, | ||
| "@id": "https://openminds.om-i.org/instances/commonCoordinateSpace/MNI-Colin27", | ||
| "@type": "https://openminds.om-i.org/types/CommonCoordinateSpace", | ||
| "abbreviation": "MNI-Colin27", | ||
| "author": null, | ||
| "custodian": null, | ||
| "description": "A stereotaxic average of T1-, T2- and PD-weighted MRI scans of the same individual (27, 12 and 12 scans, respectively). It was created at the Montreal Neurological Institute (MNI). The MRI scans were automatically registered to a common stereotaxic space using MRITOTAL (an automated volumetric registration procedure), resampled and intensity averaged. [sources: [Holmes et al. (1998)](https://doi.org/10.1097/00004728-199803000-00032) and descriptions provided under [‘MNI-Colin27’ on their homepage]( https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases)]", | ||
| "digitalIdentifier": null, | ||
| "fullName": "MNI Colin27 Average Brain Stereotaxic Registration Model", | ||
| "hasVersion": [ | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_1998" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_2008" | ||
| } | ||
| ], | ||
| "homepage": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases", | ||
|
Member
There was a problem hiding this comment. kill this link (only keep homepages for the versions leading to the specific info pages of each version) |
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| "howToCite": "Please make sure to follow the copyright of the [MNI Colin27 Average Brain Stereotaxic Registration Model](https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27). You may also cite its original publication, [Holmes et al. (1998)](http://doi.org/10.1097/00004728-199803000-00032), and/or its later publication, [Aubert-Broche et al. (2006)](https://doi.org/10.1016/j.neuroimage.2006.03.052).", | ||
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| "ontologyIdentifier": null, | ||
| "shortName": "MNI Colin27 Average Brain", | ||
| "usedSpecies": { | ||
| "@id": "https://openminds.om-i.org/instances/species/homoSapiens" | ||
| } | ||
| } | ||
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please provide holder and year