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The COBRA Toolbox v3.6

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@farid-zare farid-zare released this 20 Oct 14:16
· 213 commits to master since this release
v3.6
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COBRA Toolbox v3.6 – Release Summary

Highlights

  • Documentation

    • Switched to relative links and fixed broken image and index links.
    • Added software lifecycle documentation and COBRA version citation notice.
    • Updated README files with version badges and stable links.

  • Bug Fixes

    • Fixed major issue in verifyRuleSyntax affecting large models.
    • Corrected file handling errors in mgPipe and minor bugs in vmhFoodFinder and related functions.
    • Resolved multiple small issues across Persephone and nutrition toolboxes.

  • Toolbox Updates

    • Enhanced Persephone performance and personalisation workflow.
    • Added microbiome model support in diet functions.
    • Improved nutrition toolbox functions per reviewer feedback.
    • Introduced new MicroMap function.

  • Maintenance

    • Removed obsolete binary files and updated submodules.
    • Updated CI environment checks and resource tracking permissions.

New Contributors

Full Changelog: v3.5 → v3.6

Contributors

emilpaulitz and PaulaWalsh1
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