NBT2025 manuscript

Clone the repository

git clone https://github.com/openproblems-bio/nbt2025-manuscript.git

Change directory

cd nbt2025-manuscript

Check out submodules

git submodule update --init

Install dependencies

Rscript -e 'install.packages(c("tidyverse", "funkyheatmap", "ggbeeswarm", "patchwork", "cowplot", "ggbreak", "ggrepel", "forcats"))'

Generate figures

Rscript -e 'source("scripts/figure1a.R")'
Rscript -e 'source("scripts/figure2c.R")'
Rscript -e 'source("scripts/supnote2_figures.R")'

Convert pdfs into pngs

scripts/convert_figures.sh