adding scprint

[jkobject]

Describe your changes

copied a very similar workflow to scprint batch integration task since they are almost the same

[jkobject]

@lazappi getting an issue here even when just building the tool

Doing: viash ns build --parallel or viash run src/methods/scprint/config.vsh.yaml -- --input resources_test/task_dimensionality_reduction/cxg_mouse_pancreas_atlas/dataset.h5ad --output reduced.h5ad

getting:

viash: Missing resource /home/ml4ig1/task_dimensionality_reduction/target/executable/methods/scprint/read_anndata_partial.py as specified in file:///home/ml4ig1/task_dimensionality_reduction/

[jkobject]

I found the solution

[jkobject]

Just FYI, resources_test/task_dimensionality_reduction/cxg_mouse_pancreas_atlas/dataset.h5ad doesn't contain a .uns["dataset_organism"]

[lazappi]

I think you need to remove this for the checks to pass

[lazappi]

@jkobject Thanks for the contribution! However, this tasks is specifically dimensionality reduction for 2D visualisation so I don't think scPRINT is appropriate here. It's meant to evaluate methods like UMAP rather than big embedding models. Sorry for not realising earlier, I got mixed up with the PRs on other tasks.

[jkobject]

OKay, makes sense. I wasn't sure actually.