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Merged
rcannood merged 3 commits into from
Jan 8, 2025
Merged

Update authors #6

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8264b93
Update _viash.yaml
rcannood Jan 8, 2025
14c96ac
update readme
rcannood Jan 8, 2025
454000a
update readme
rcannood Jan 8, 2025
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41 changes: 20 additions & 21 deletions README.md
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Expand Up @@ -35,50 +35,49 @@ data shows that this is not trivial.
| Alejandro Granados | author |
| Alex Tong | author |
| Bastian Rieck | author |
| Christopher Lance | author |
| Daniel Burkhardt | author |
| Kai Waldrant | contributor |
| Kaiwen Deng | contributor |
| Louise Deconinck | author |
| Robrecht Cannoodt | author, maintainer |
| Xueer Chen | contributor |
| Jiwei Liu | contributor |

## API

``` mermaid
flowchart LR
file_common_dataset_mod1("Raw dataset RNA")
comp_process_datasets[/"Process Dataset"/]
file_test_mod1("Test mod1")
file_test_mod2("Test mod2")
file_train_mod1("Train mod1")
file_train_mod2("Train mod2")
comp_control_method[/"Control method"/]
comp_method_predict[/"Predict"/]
comp_method_train[/"Train"/]
comp_method[/"Method"/]
comp_metric[/"Metric"/]
file_prediction("Prediction")
file_pretrained_model("Pretrained model")
file_score("Score")
file_common_dataset_mod2("Raw dataset mod2")
flowchart TB
file_common_dataset_mod1("<a href='https://github.com/openproblems-bio/task_predict_modality#file-format-raw-dataset-rna'>Raw dataset RNA</a>")
comp_process_datasets[/"<a href='https://github.com/openproblems-bio/task_predict_modality#component-type-process-dataset'>Process Dataset</a>"/]
file_test_mod1("<a href='https://github.com/openproblems-bio/task_predict_modality#file-format-test-mod1'>Test mod1</a>")
file_test_mod2("<a href='https://github.com/openproblems-bio/task_predict_modality#file-format-test-mod2'>Test mod2</a>")
file_train_mod1("<a href='https://github.com/openproblems-bio/task_predict_modality#file-format-train-mod1'>Train mod1</a>")
file_train_mod2("<a href='https://github.com/openproblems-bio/task_predict_modality#file-format-train-mod2'>Train mod2</a>")
comp_control_method[/"<a href='https://github.com/openproblems-bio/task_predict_modality#component-type-control-method'>Control method</a>"/]
comp_method_predict[/"<a href='https://github.com/openproblems-bio/task_predict_modality#component-type-predict'>Predict</a>"/]
comp_method_train[/"<a href='https://github.com/openproblems-bio/task_predict_modality#component-type-train'>Train</a>"/]
comp_method[/"<a href='https://github.com/openproblems-bio/task_predict_modality#component-type-method'>Method</a>"/]
comp_metric[/"<a href='https://github.com/openproblems-bio/task_predict_modality#component-type-metric'>Metric</a>"/]
file_prediction("<a href='https://github.com/openproblems-bio/task_predict_modality#file-format-prediction'>Prediction</a>")
file_pretrained_model("<a href='https://github.com/openproblems-bio/task_predict_modality#file-format-pretrained-model'>Pretrained model</a>")
file_score("<a href='https://github.com/openproblems-bio/task_predict_modality#file-format-score'>Score</a>")
file_common_dataset_mod2("<a href='https://github.com/openproblems-bio/task_predict_modality#file-format-raw-dataset-mod2'>Raw dataset mod2</a>")
file_common_dataset_mod1---comp_process_datasets
comp_process_datasets-->file_test_mod1
comp_process_datasets-->file_test_mod2
comp_process_datasets-->file_train_mod1
comp_process_datasets-->file_train_mod2
file_test_mod1---comp_control_method
file_test_mod1---comp_method_predict
file_test_mod1---comp_method_train
file_test_mod1-.-comp_method_train
file_test_mod1---comp_method
file_test_mod2---comp_control_method
file_test_mod2---comp_metric
file_train_mod1---comp_control_method
file_train_mod1---comp_method_predict
file_train_mod1-.-comp_method_predict
file_train_mod1---comp_method_train
file_train_mod1---comp_method
file_train_mod2---comp_control_method
file_train_mod2---comp_method_predict
file_train_mod2-.-comp_method_predict
file_train_mod2---comp_method_train
file_train_mod2---comp_method
comp_control_method-->file_prediction
Expand Down
7 changes: 6 additions & 1 deletion _viash.yaml
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Expand Up @@ -45,6 +45,11 @@ authors:
roles: [ author ]
info:
github: Pseudomanifold
- name: Christopher Lance
roles: [ author ]
info:
github: xlancelottx
orcid: "0000-0002-1275-9802"
- name: Daniel Burkhardt
roles: [ author ]
info:
Expand All @@ -68,7 +73,7 @@ authors:
info:
github: rcannood
orcid: "0000-0003-3641-729X"

links:
issue_tracker: https://github.com/openproblems-bio/task_predict_modality/issues
repository: https://github.com/openproblems-bio/task_predict_modality
Expand Down
2 changes: 1 addition & 1 deletion scripts/create_readme.sh
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Expand Up @@ -2,4 +2,4 @@

set -e

common/scripts/create_task_readme
common/scripts/create_task_readme --input src
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