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Update Jupyter tutorial links to point to opensim-org/opensim-core notebooks #4129

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60ace08
Update notebook links to point to opensim-org/opensim-core notebooks
nickbianco Aug 19, 2025
7d70897
Use opensim-core main branch in 'Open in Colab' links
nickbianco Aug 19, 2025
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2 changes: 1 addition & 1 deletion Bindings/Python/tutorials/Tutorial 1 - Introduction to OpenSim.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb\">\n",
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb\">\n",
" <img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>\n",
"</a>"
]
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6 changes: 3 additions & 3 deletions Bindings/Python/tutorials/Tutorial 2 - Creating and Simulating a simple arm Model.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%202%20-%20Creating%20and%20Simulating%20a%20simple%20arm%20Model.ipynb\">\n",
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%202%20-%20Creating%20and%20Simulating%20a%20simple%20arm%20Model.ipynb\">\n",
" <img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>\n",
"</a>"
]
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"\n",
"In this tutorial, you will create an arm model. The model is very simple and consists of two bones (humerus and radius), and a muscle to flex the arm (biceps).\n",
"\n",
"The first step of this tutorial will be to set up the environment (See ***Tutorial 1: Introduction to OpenSim***), and then you will programmatically create the model by defining the necessary bodies, muscles, and joints. Finally, you will perform Forward Kinematics [[2]](https://mitpress.mit.edu/9780262044202/biomechanics-of-movement/) with the model to obtain kinematic data.\n",
"The first step of this tutorial will be to set up the environment, and then you will programmatically create the model by defining the necessary bodies, muscles, and joints. Finally, you will perform Forward Kinematics [[2]](https://mitpress.mit.edu/9780262044202/biomechanics-of-movement/) with the model to obtain kinematic data.\n",
"\n",
"**Local Installation**\n",
"\n",
Expand All @@ -67,7 +67,7 @@
"id": "mmmTuEI4HQJG"
},
"source": [
"First, set up the environment by executing the following cell (See [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb))."
"First, set up the environment by executing the following cell (See [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb))."
]
},
{
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4 changes: 2 additions & 2 deletions Bindings/Python/tutorials/Tutorial 3 - Loading and Modifying OpenSim Models.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%203%20-%20Loading%20and%20Modifying%20OpenSim%20Models.ipynb\">\n",
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%203%20-%20Loading%20and%20Modifying%20OpenSim%20Models.ipynb\">\n",
" <img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>\n",
"</a>"
]
Expand Down Expand Up @@ -73,7 +73,7 @@
"id": "mmmTuEI4HQJG"
},
"source": [
"First, set up the environment by executing the following cell (see [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) for more details)."
"First, set up the environment by executing the following cell (see [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) for more details)."
]
},
{
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4 changes: 2 additions & 2 deletions ...thon/tutorials/Tutorial 4 - Musculoskeletal models, Motion Files and MuscleAnalysis.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%204%20-%20Musculoskeletal%20models%2C%20Motion%20Files%20and%20MuscleAnalysis.ipynb\">\n",
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%204%20-%20Musculoskeletal%20models%2C%20Motion%20Files%20and%20MuscleAnalysis.ipynb\">\n",
" <img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>\n",
"</a>"
]
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"id": "mmmTuEI4HQJG"
},
"source": [
"First, set up the environment by executing the following cell (see [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) for more information)."
"First, set up the environment by executing the following cell (see [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) for more information)."
]
},
{
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4 changes: 2 additions & 2 deletions ...ngs/Python/tutorials/Tutorial 5 - Scaling, Inverse Kinematics, and Inverse Dynamics.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%205%20-%20Scaling%2C%20Inverse%20Kinematics%2C%20and%20Inverse%20Dynamics.ipynb\">\n",
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%205%20-%20Scaling%2C%20Inverse%20Kinematics%2C%20and%20Inverse%20Dynamics.ipynb\">\n",
" <img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>\n",
"</a>"
]
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"id": "mmmTuEI4HQJG"
},
"source": [
"First, set up the environment by executing the following cell (See [Tutorial 1: Introduction to OpenSim in Colab](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) for more information)."
"First, set up the environment by executing the following cell (See [Tutorial 1: Introduction to OpenSim in Colab](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) for more information)."
]
},
{
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14 changes: 7 additions & 7 deletions Bindings/Python/tutorials/Tutorial 6 - Static Optimization.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%206%20-%20Static%20Optimization.ipynb\">\n",
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%206%20-%20Static%20Optimization.ipynb\">\n",
" <img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>\n",
"</a>"
]
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"\n",
"User Guide | Prerequisite Tutorials | Other Resources\n",
"--------------------|------------------------|------------------\n",
"[Static Optimization](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53090088/Static+Optimization) | [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) | [[1]](https://doi.org/10.1115/1.4029304) \n",
"[Inverse Kinematics](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53090037/Inverse+Kinematics) | [Tutorial 2 : Creating and Simulating a Simple Arm Model ](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%202%20-%20Creating%20and%20Simulating%20a%20simple%20arm%20Model.ipynb) | [[2]](https://doi.org/10.1109/TBME.2007.901024) \n",
"[Residual Reduction Algorithm](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53089669/Residual+Reduction+Algorithm) | [Tutorial 3: Loading and Modifying OpenSim Models](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%203%20-%20Loading%20and%20Modifying%20OpenSim%20Models.ipynb) | \n",
"[Inverse Dynamics](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53090074/Inverse+Dynamics) | [Tutorial 4: Musculoskeletal Models, Motion Files, and MuscleAnalysis](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%204%20-%20Musculoskeletal%20models%2C%20Motion%20Files%20and%20MuscleAnalysis.ipynb) | | \n",
"[Scaling](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53090000/Scaling) | [Tutorial 5: Scaling, Inverse Kinematics, and Inverse Dynamics](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%205%20-%20Scaling%2C%20Inverse%20Kinematics%2C%20and%20Inverse%20Dynamics.ipynb) | "
"[Static Optimization](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53090088/Static+Optimization) | [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) | [[1]](https://doi.org/10.1115/1.4029304) \n",
"[Inverse Kinematics](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53090037/Inverse+Kinematics) | [Tutorial 2 : Creating and Simulating a Simple Arm Model ](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%202%20-%20Creating%20and%20Simulating%20a%20simple%20arm%20Model.ipynb) | [[2]](https://doi.org/10.1109/TBME.2007.901024) \n",
"[Residual Reduction Algorithm](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53089669/Residual+Reduction+Algorithm) | [Tutorial 3: Loading and Modifying OpenSim Models](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%203%20-%20Loading%20and%20Modifying%20OpenSim%20Models.ipynb) | \n",
"[Inverse Dynamics](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53090074/Inverse+Dynamics) | [Tutorial 4: Musculoskeletal Models, Motion Files, and MuscleAnalysis](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%204%20-%20Musculoskeletal%20models%2C%20Motion%20Files%20and%20MuscleAnalysis.ipynb) | | \n",
"[Scaling](https://opensimconfluence.atlassian.net/wiki/spaces/OpenSim/pages/53090000/Scaling) | [Tutorial 5: Scaling, Inverse Kinematics, and Inverse Dynamics](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%205%20-%20Scaling%2C%20Inverse%20Kinematics%2C%20and%20Inverse%20Dynamics.ipynb) | "
]
},
{
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"id": "mmmTuEI4HQJG"
},
"source": [
"First, set up the environment by executing the following cell (See [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) for more information)."
"First, set up the environment by executing the following cell (See [Tutorial 1: Introduction to OpenSim](https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%201%20-%20Introduction%20to%20OpenSim.ipynb) for more information)."
]
},
{
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2 changes: 1 addition & 1 deletion Bindings/Python/tutorials/Tutorial 7 - Introduction to OpenSim Moco.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%207%20-%20Introduction%20to%20OpenSim%20Moco.ipynb\">\n",
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%207%20-%20Introduction%20to%20OpenSim%20Moco.ipynb\">\n",
" <img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>\n",
"</a>"
]
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2 changes: 1 addition & 1 deletion .../Python/tutorials/Tutorial 8 - Creating Muscle-driven Simulations with OpenSim Moco.ipynb
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"id": "view-in-github"
},
"source": [
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/nickbianco/opensim-core/blob/python_examples/Bindings/Python/tutorials/Tutorial%208%20-%20Creating%20Muscle-driven%20Simulations%20with%20OpenSim%20Moco.ipynb\">\n",
"<a target=\"_blank\" href=\"https://colab.research.google.com/github/opensim-org/opensim-core/blob/main/Bindings/Python/tutorials/Tutorial%208%20-%20Creating%20Muscle-driven%20Simulations%20with%20OpenSim%20Moco.ipynb\">\n",
" <img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>\n",
"</a>"
]
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