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⚠️ This PR requires a MERGE COMMIT (Don't squash!)

* feat: e2g interval features for l2g

* chore: pre-commit auto fixes [...]

* feat: config for interval features

* fix: splat columns in convert_from_long_to_wide

* fix: interval start end to integers

* feat: overlap intervals using bin candidates

* fix: interval start end as integers

* fix: binned interval join

* fix: trainer _setup redundant parameter

* chore: fix docstring in interval feature methods

* chore: fix interval feature descriptions

* chore: clarify caching strategy

* fix: address comments and adjust tests accordingly

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Szymon Szyszkowski <[email protected]>
Co-authored-by: project-defiant <[email protected]>
* fix: bug with allele matching in liftover

* test: fixing tests and minor bugfix in code

* fix: adding logic to ensure no unexpected contig ids

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Co-authored-by: Szymon Szyszkowski <[email protected]>
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3 participants