@@ -62,30 +62,8 @@ <h1>Publications</h1>
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- < h2 > Unit testing, model validation, and biological simulation</ h2 >
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- August 10 2016, F1000 Research. DOI: 10.12688/f1000research.9315.1
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- Gopal Sarma, Travis Jacobs, Mark Watts, Vahid Ghayoomie, Stephen Larson, and Richard Gerkin
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- The growth of the software industry has gone hand in hand with the development of tools and cultural practices
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- for ensuring the reliability of complex pieces of software. These tools and practices are now acknowledged
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- to be essential to the management of modern software. As computational models and methods have become
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- increasingly common in the biological sciences, it is important to examine how these practices can accelerate
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- biological software development and improve research quality. In this article, we give a focused case study
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- of our experience with the practices of unit testing and test-driven development in OpenWorm, an open-science
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- project aimed at modeling Caenorhabditis elegans. We identify and discuss the challenges of incorporating
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- test-driven development into a heterogeneous, data-driven project, as well as the role of model validation
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- tests, a category of tests unique to software which expresses scientific models.< br />
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- < a href ="https://f1000research.com/articles/10.12688/f1000research.9315.1/doi " target ="_blank "> Read more</ a > .
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< h2 > Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue</ h2 >
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@@ -127,7 +105,7 @@ <h2>Application of smoothed particle hydrodynamics to modeling mechanisms of bio
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< h2 > Unit Testing, Model Validation, and Biological Simulation</ h2 >
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- 2016, F1000Research 5:1946 (2016), DOI: 10.12688/f1000research.9315.1
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+ August 10 2016, F1000Research 5:1946 (2016), DOI: 10.12688/f1000research.9315.1
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Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, S. Vahid Ghayoomie, Stephen D. Larson, and Rick C. Gerkin
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