Skip to content

Commit 5e6a997

Browse files
authored
Merge pull request #134 from openworm/gidili-remove-dupe-publication
Remove duplicate publication
2 parents a73e4a8 + 8dd4ffd commit 5e6a997

File tree

1 file changed

+3
-25
lines changed

1 file changed

+3
-25
lines changed

publications.html

Lines changed: 3 additions & 25 deletions
Original file line numberDiff line numberDiff line change
@@ -62,30 +62,8 @@ <h1>Publications</h1>
6262
<div class="marketing">
6363
<br/>
6464
<i class="fa fa-book fa-xl"></i>
65-
<div class="large-spacer"></div><div class="large-spacer"></div>
66-
<div>
67-
<h2>Unit testing, model validation, and biological simulation</h2>
68-
<div class="clearer"></div>
69-
<p>
70-
August 10 2016, F1000 Research. DOI: 10.12688/f1000research.9315.1
71-
</p>
72-
<p class="authors">
73-
Gopal Sarma, Travis Jacobs, Mark Watts, Vahid Ghayoomie, Stephen Larson, and Richard Gerkin
74-
</p>
75-
<p>
76-
The growth of the software industry has gone hand in hand with the development of tools and cultural practices
77-
for ensuring the reliability of complex pieces of software. These tools and practices are now acknowledged
78-
to be essential to the management of modern software. As computational models and methods have become
79-
increasingly common in the biological sciences, it is important to examine how these practices can accelerate
80-
biological software development and improve research quality. In this article, we give a focused case study
81-
of our experience with the practices of unit testing and test-driven development in OpenWorm, an open-science
82-
project aimed at modeling Caenorhabditis elegans. We identify and discuss the challenges of incorporating
83-
test-driven development into a heterogeneous, data-driven project, as well as the role of model validation
84-
tests, a category of tests unique to software which expresses scientific models.<br/>
85-
<a href="https://f1000research.com/articles/10.12688/f1000research.9315.1/doi" target="_blank">Read more</a>.
86-
</p>
87-
</div>
88-
<hr class="soften">
65+
<div class="large-spacer"></div>
66+
<div class="large-spacer"></div>
8967
<div>
9068
<h2>Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue</h2>
9169
<div class="clearer"></div>
@@ -127,7 +105,7 @@ <h2>Application of smoothed particle hydrodynamics to modeling mechanisms of bio
127105
<h2>Unit Testing, Model Validation, and Biological Simulation</h2>
128106
<div class="clearer"></div>
129107
<p>
130-
2016, F1000Research 5:1946 (2016), DOI: 10.12688/f1000research.9315.1
108+
August 10 2016, F1000Research 5:1946 (2016), DOI: 10.12688/f1000research.9315.1
131109
</p>
132110
<p class="authors">
133111
Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, S. Vahid Ghayoomie, Stephen D. Larson, and Rick C. Gerkin

0 commit comments

Comments
 (0)